Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 USP9YP14-201ENST00000430663 563 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 BMS1P19-201ENST00000433925 393 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 CBX1P1-201ENST00000440184 427 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 COX6CP12-201ENST00000446748 202 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 EEF1E1P1-201ENST00000446998 430 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 NUTF2P7-201ENST00000453086 375 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 FGF7P3-201ENST00000454645 303 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 DHFRP3-201ENST00000455595 559 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 RPS26P3-201ENST00000470205 348 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC090543.2-201ENST00000483963 348 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC004057.1-201ENST00000485827 348 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC090071.1-201ENST00000507713 644 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC109458.1-201ENST00000508858 316 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 PPBPP1-201ENST00000510807 373 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AF186190.1-201ENST00000517470 480 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 PHBP17-201ENST00000528576 541 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 MIR3160-1-201ENST00000577972 85 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AL136363.2-201ENST00000604173 851 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AL139286.2-201ENST00000606838 396 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AL356596.1-201ENST00000624230 379 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC068724.3-201ENST00000625906 87 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 IQCB2P-201ENST00000401788 1633 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP29Q9HBJ7 AC117529.2-201ENST00000512159 2068 ntBASIC4.49□□□□□ -1.69
USP29Q9HBJ7 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AL079343.1-201ENST00000572358 1771 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 PABPC1P9-201ENST00000426076 1612 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC008033.1-201ENST00000216407 1162 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 RNU6-462P-201ENST00000362659 105 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 RNU4-91P-201ENST00000364778 135 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 Y_RNA.359-201ENST00000365498 102 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 RNU6-723P-201ENST00000383973 107 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 RNU6-648P-201ENST00000410190 107 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 RNU2-16P-201ENST00000410712 136 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AL592447.1-201ENST00000447592 540 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 MTCO1P48-201ENST00000448024 1096 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 RPL5P32-201ENST00000454085 879 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 RNA5SP269-201ENST00000459032 137 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC025445.1-201ENST00000502728 300 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AL117351.2-201ENST00000513571 157 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 IGHV3-32-201ENST00000519182 355 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AL109766.1-201ENST00000555080 552 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 PCMTD1P2-201ENST00000565017 355 ntBASIC4.48□□□□□ -1.69
USP29Q9HBJ7 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms