Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC113194.1-201ENST00000606037 500 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC097478.2-201ENST00000610572 514 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AL391261.4-201ENST00000616012 481 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC008147.4-201ENST00000617570 1204 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AC068722.2-201ENST00000618734 544 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 AP000676.4-201ENST00000624659 623 ntBASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC3Q9BQI4 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 U1.1-201ENST00000384101 164 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 RPL21P17-201ENST00000397467 475 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 ZNF603P-201ENST00000405613 487 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 RNA5SP80-201ENST00000410475 111 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AL591419.1-201ENST00000427423 339 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 ELOCP18-201ENST00000434209 337 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 COX7BP2-201ENST00000437976 242 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 PTENP1-201ENST00000447117 1215 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 MTCO3P2-201ENST00000457365 171 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC010469.1-201ENST00000463864 576 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 MTND2P14-201ENST00000482139 351 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 WBP1LP4-201ENST00000505043 344 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 HMGN1P11-201ENST00000508668 303 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC079395.1-201ENST00000510981 262 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC008837.2-201ENST00000513076 418 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 MTCO1P30-201ENST00000515244 580 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 RNU5A-4P-201ENST00000516588 111 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 DUXAP2-201ENST00000519198 589 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 MRPS36P3-201ENST00000519284 130 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 IGLVIV-53-201ENST00000520107 367 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC087369.1-201ENST00000520775 996 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 RFPL1S-203ENST00000539579 330 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 CCNG2P1-201ENST00000549521 1000 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AL389895.1-201ENST00000554127 252 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 TRAV15-201ENST00000556680 249 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AP003117.2-201ENST00000606010 545 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC091946.2-201ENST00000606105 291 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC105429.2-201ENST00000610567 517 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC019176.2-201ENST00000611579 315 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC140725.3-201ENST00000616193 880 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC084757.4-201ENST00000616350 526 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 AC013470.4-201ENST00000619978 986 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 LINC00561-201ENST00000565815 2738 ntBASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC3Q9BQI4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC109315.1-201ENST00000584143 1347 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 XIAPP3-201ENST00000312918 795 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 RNU6-216P-201ENST00000363282 104 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 SNORD113-6-201ENST00000363345 75 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 RHOT1P2-201ENST00000366423 333 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AL136133.1-201ENST00000413694 376 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 RPS15AP40-201ENST00000419621 391 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AL139247.1-201ENST00000422768 325 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 SDCBPP2-201ENST00000424643 885 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 RPL36P19-201ENST00000430744 301 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 ELOCP8-201ENST00000439309 332 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 HMGB1P37-201ENST00000439613 609 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 RPL23AP76-201ENST00000441860 458 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 ELOCP15-201ENST00000442090 332 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms