Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 RPL36AP36-201ENST00000418616 301 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 GOT2P5-201ENST00000433995 546 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC241584.1-201ENST00000438469 1241 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC083863.1-201ENST00000438811 231 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC122718.1-201ENST00000439448 744 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 RPL21P89-201ENST00000444021 467 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 RPS29P31-201ENST00000446147 164 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC104308.1-201ENST00000454621 333 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 FAM133DP-201ENST00000464802 691 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 SLC25A15P5-201ENST00000508033 253 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 SULT1C2P1-202ENST00000562418 459 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC053481.4-201ENST00000583164 216 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 BDH2P1-201ENST00000602288 736 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AL136370.1-201ENST00000608166 691 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AL451074.6-201ENST00000608512 729 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AC090912.3-201ENST00000609775 533 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 AL592295.2-201ENST00000612578 206 ntBASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ZNF540Q8NDQ6 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AC010733.2-201ENST00000589496 5702 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 RN7SKP280-201ENST00000364196 304 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 OR1L1-202ENST00000373686 1083 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 MIR554-201ENST00000384874 96 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 OR8F1P-201ENST00000425243 930 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 OR5BE1P-201ENST00000425977 939 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 RANP8-201ENST00000444720 713 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AC004801.2-202ENST00000463559 283 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 HMGB1P25-201ENST00000468402 607 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AC010460.1-201ENST00000507087 466 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AC109471.1-201ENST00000511631 612 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AP001330.4-201ENST00000604350 154 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 AL161637.1-201ENST00000622380 412 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 OR5BE1P-202ENST00000641168 1176 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 CUL1P1-201ENST00000509510 2425 ntBASIC3.53□□□□□ -1.84
ZNF540Q8NDQ6 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.53□□□□□ -1.85
ZNF540Q8NDQ6 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.53□□□□□ -1.85
ZNF540Q8NDQ6 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
ZNF540Q8NDQ6 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 RNU6-251P-201ENST00000363235 104 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 RNU6-173P-201ENST00000364215 104 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 RNA5SP283-201ENST00000365604 119 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 MIR184-201ENST00000384962 84 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 SNORA57.3-201ENST00000411095 141 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 TRIAP1P1-201ENST00000427062 225 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 MTATP6P4-201ENST00000427725 675 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AC110792.1-201ENST00000491826 472 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 SNORA31.1-201ENST00000515993 133 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 SNORA31.5-201ENST00000516190 133 ntBASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.52□□□□□ -1.85
ZNF540Q8NDQ6 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms