Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 CAB39P1-201ENST00000502277 460 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 SNORA19.3-201ENST00000516165 130 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 RNU6-885P-201ENST00000516607 104 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 MTCO3P15-201ENST00000526563 574 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC023161.2-201ENST00000551218 780 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC037471.2-201ENST00000564941 598 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC112220.2-201ENST00000605513 533 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AL391497.1-201ENST00000608671 547 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC107294.3-201ENST00000609211 526 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AL121772.2-201ENST00000614331 297 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC022306.3-201ENST00000619930 550 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC009269.6-201ENST00000621778 588 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 MIR4496-201ENST00000635896 61 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 MIR4278-201ENST00000636094 69 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC068620.4-201ENST00000636730 1182 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 MTND5P31-201ENST00000419366 1374 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 ELL2P4-201ENST00000446870 1376 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 AC138915.3-201ENST00000562908 1389 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SKA3Q8IX90 MTND5P28-201ENST00000438005 1594 ntBASIC3.21□□□□□ -1.9
SKA3Q8IX90 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.21□□□□□ -1.9
SKA3Q8IX90 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC091152.2-201ENST00000591628 2569 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC058791.1-201ENST00000608412 3198 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 RNU6-839P-201ENST00000363347 108 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 RNA5SP51-201ENST00000364750 119 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 RNU6-805P-201ENST00000365643 106 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SKA3Q8IX90 RNU6-356P-201ENST00000384140 107 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 RNU6-921P-201ENST00000384361 107 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 RNU6-925P-201ENST00000384629 104 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 MIR122-201ENST00000385044 85 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 TMSB4XP8-201ENST00000402089 135 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 BTBD10P2-201ENST00000404779 676 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 RSL24D1P1-201ENST00000404972 493 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 TMSB4XP6-201ENST00000415187 135 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 RPS3AP9-201ENST00000417027 792 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 TMSB4XP1-201ENST00000424567 135 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 KCTD10P1-201ENST00000434203 625 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC007389.2-201ENST00000434630 306 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 RRM2P4-201ENST00000441721 562 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC010655.1-201ENST00000449336 292 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 PPIAP3-201ENST00000450588 505 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 MRPL42P4-201ENST00000453267 443 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC078817.1-201ENST00000492623 435 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 HMGN1P11-201ENST00000508668 303 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC093752.1-206ENST00000511823 336 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 RNU6-276P-201ENST00000516114 96 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 RN7SKP289-201ENST00000517244 295 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 OR5D17P-201ENST00000531492 978 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 KLKP1-201ENST00000595979 403 ntBASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.2□□□□□ -1.9
SKA3Q8IX90 AC069431.2-201ENST00000604149 1099 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms