Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC125336.1-201ENST00000508893 2827 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC011155.1-201ENST00000316512 456 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 RNU6-1309P-201ENST00000363305 108 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 RNU1-130P-201ENST00000363930 160 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 RNU6-641P-201ENST00000384006 107 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 RNU6-1029P-201ENST00000384109 107 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 RNU6-907P-201ENST00000390924 102 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 RNU4-14P-201ENST00000410858 122 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 OR6E1P-201ENST00000414424 923 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC069213.2-201ENST00000420238 366 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AL133173.1-201ENST00000423458 397 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC138761.5-201ENST00000433967 325 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 OR6D1P-201ENST00000436165 939 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC092013.1-201ENST00000438795 332 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 FHP1-201ENST00000442741 703 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AP000281.1-201ENST00000444036 316 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 PRPS1P1-201ENST00000445305 876 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 NOP56P2-201ENST00000447491 769 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 HMGB3P22-202ENST00000451823 572 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 ELOCP24-201ENST00000456370 334 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC017037.1-201ENST00000508460 471 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC097486.1-201ENST00000515331 210 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 RNU6-794P-201ENST00000517261 64 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 COPS8P3-201ENST00000526024 482 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 EIF4A2P5-201ENST00000529914 499 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 OR5B10P-201ENST00000532869 642 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC128657.1-201ENST00000549459 145 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AL117187.1-201ENST00000555482 181 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 MIR5690-201ENST00000583739 73 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 CTHRC1P1-201ENST00000605383 469 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC092807.2-201ENST00000609367 243 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 MIR6864-201ENST00000617935 70 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 AP000843.1-201ENST00000624880 701 ntBASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
UBE3DQ7Z6J8 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 Y_RNA.452-201ENST00000384202 108 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 RNU6-331P-201ENST00000384724 107 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 RNU6-370P-201ENST00000411008 104 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 NDUFB4P8-201ENST00000435351 367 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC019185.1-201ENST00000442718 389 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 RAC1P7-201ENST00000445367 377 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 Y_RNA.653-201ENST00000459091 95 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AL135752.1-201ENST00000479477 471 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 RN7SL273P-201ENST00000481561 299 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC012123.2-201ENST00000485809 248 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AL049874.2-201ENST00000492636 288 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 SRP72-202ENST00000504757 745 ntTSL 2 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AL358913.1-201ENST00000554342 121 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC007823.1-201ENST00000569932 1566 ntBASIC5.27□□□□□ -1.57
UBE3DQ7Z6J8 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 212.1 ms