Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 OR2B7P-201ENST00000429302 934 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
USP39Q53GS9 RPS20P1-201ENST00000434853 354 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.91□□□□□ -1.62
USP39Q53GS9 RPL12P46-201ENST00000436610 195 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 RPL7P29-201ENST00000437151 728 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 RPL35AP21-201ENST00000437667 333 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 BTF3P6-201ENST00000448054 499 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 HMGB1P4-201ENST00000455362 567 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AC022364.2-201ENST00000457963 554 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 RPL7AP52-201ENST00000458096 790 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 APOOP2-201ENST00000461561 539 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AC012170.1-201ENST00000495139 359 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.91□□□□□ -1.62
USP39Q53GS9 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.91□□□□□ -1.62
USP39Q53GS9 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.91□□□□□ -1.62
USP39Q53GS9 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.91□□□□□ -1.62
USP39Q53GS9 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.91□□□□□ -1.62
USP39Q53GS9 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.91□□□□□ -1.62
USP39Q53GS9 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.91□□□□□ -1.62
USP39Q53GS9 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.91□□□□□ -1.62
USP39Q53GS9 AC239860.2-201ENST00000525886 270 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AP002812.4-201ENST00000532139 286 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.91□□□□□ -1.62
USP39Q53GS9 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.91□□□□□ -1.62
USP39Q53GS9 ARL2BPP2-201ENST00000550907 489 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AC137800.2-201ENST00000574375 120 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 MIR3671-201ENST00000580455 88 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.91□□□□□ -1.62
USP39Q53GS9 AC073091.2-201ENST00000603205 907 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 YWHAQP7-201ENST00000603536 658 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AL356218.2-201ENST00000605264 187 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AL121655.1-201ENST00000605811 308 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 FAM27B-201ENST00000610601 213 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AC005332.6-201ENST00000613178 446 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 AC104010.1-201ENST00000616889 150 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 MIR6830-201ENST00000636015 70 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 MKKS-204ENST00000639674 192 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.91□□□□□ -1.62
USP39Q53GS9 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USP39Q53GS9 LINC01109-201ENST00000603837 3081 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.91□□□□□ -1.62
USP39Q53GS9 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP39Q53GS9 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP39Q53GS9 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.91□□□□□ -1.62
USP39Q53GS9 GDI2P1-201ENST00000429312 1336 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 DCAF13P1-201ENST00000495256 1330 ntBASIC4.91□□□□□ -1.62
USP39Q53GS9 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP39Q53GS9 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP39Q53GS9 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
USP39Q53GS9 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.62
USP39Q53GS9 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.9□□□□□ -1.62
USP39Q53GS9 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
USP39Q53GS9 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
USP39Q53GS9 AC104260.2-201ENST00000623551 3497 ntBASIC4.9□□□□□ -1.62
USP39Q53GS9 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
USP39Q53GS9 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
USP39Q53GS9 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
USP39Q53GS9 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USP39Q53GS9 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 IGKV7-3-201ENST00000357453 298 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
USP39Q53GS9 Y_RNA.394-201ENST00000383942 103 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 SNORA70F-201ENST00000384142 135 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 Y_RNA.460-201ENST00000384255 102 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 RNU6-185P-201ENST00000384421 107 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 Y_RNA.548-201ENST00000384656 105 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 RPS3AP36-201ENST00000398190 775 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AL590004.1-201ENST00000405321 300 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 RNU6-603P-201ENST00000411403 107 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 RPS3AP3-201ENST00000411933 242 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 OR51A3P-201ENST00000413596 924 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.9□□□□□ -1.63
USP39Q53GS9 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.9□□□□□ -1.63
USP39Q53GS9 MTCO3P21-201ENST00000430791 643 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.9□□□□□ -1.63
USP39Q53GS9 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.9□□□□□ -1.63
USP39Q53GS9 HMGB3P9-201ENST00000441799 583 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.9□□□□□ -1.63
USP39Q53GS9 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.9□□□□□ -1.63
USP39Q53GS9 USP9YP12-201ENST00000450481 570 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.9□□□□□ -1.63
USP39Q53GS9 NIP7P2-201ENST00000485801 544 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 HMGB1P29-201ENST00000505659 499 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 HMGN1P13-201ENST00000505795 138 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AC026412.2-201ENST00000512270 1075 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.9□□□□□ -1.63
USP39Q53GS9 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.9□□□□□ -1.63
USP39Q53GS9 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.9□□□□□ -1.63
USP39Q53GS9 AC074050.1-201ENST00000563247 211 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AC010928.3-201ENST00000587712 541 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.9□□□□□ -1.63
USP39Q53GS9 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.9□□□□□ -1.63
USP39Q53GS9 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.9□□□□□ -1.63
USP39Q53GS9 AL590392.1-201ENST00000604960 446 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC4.9□□□□□ -1.63
USP39Q53GS9 AL050343.2-201ENST00000607338 280 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AL049794.2-201ENST00000616301 365 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AC108479.2-201ENST00000617314 601 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms