Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MTATP6P26-201ENST00000445926 662 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 OR6K5P-201ENST00000447050 945 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 ART2BP-201ENST00000453501 499 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 ACTR3P3-201ENST00000480448 893 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 RNY4P37-201ENST00000516225 96 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 IFITM8P-201ENST00000522529 394 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 NAP1L1P1-201ENST00000524793 1063 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 EMP1-206ENST00000537612 505 ntTSL 3 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 ELOCP32-201ENST00000548625 324 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 HSPE1P3-201ENST00000559254 309 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 MIR4637-201ENST00000582405 84 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AP006248.2-201ENST00000623309 592 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AC004943.3-201ENST00000624116 600 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 AP000526.1-201ENST00000603308 1388 ntBASIC4.13□□□□□ -1.75
COL28A1Q2UY09 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL28A1Q2UY09 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 CPHL1P-201ENST00000461341 3407 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 LINC00622-201ENST00000562811 1570 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 RPL23AP29-201ENST00000397284 453 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 ATP5F1P4-201ENST00000397288 746 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 HMGB1P17-201ENST00000403495 628 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 RN7SKP33-201ENST00000410942 340 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 RNA5SP39-201ENST00000411245 120 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 MTCYBP38-201ENST00000417160 1123 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC073335.1-201ENST00000427776 363 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 SETD6P1-201ENST00000444575 317 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 LINC00888-204ENST00000487386 421 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 OR4G11P-201ENST00000492842 939 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC114981.1-201ENST00000503897 678 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC010486.2-201ENST00000505572 483 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC006499.2-201ENST00000513470 337 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 RNA5SP446-201ENST00000515955 82 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 PTK2-220ENST00000520151 573 ntTSL 4 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 OSBPL9P5-201ENST00000542581 171 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 PDCD5P1-201ENST00000543528 309 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 CENPUP2-201ENST00000555897 1186 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC106782.4-201ENST00000568264 210 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 MIR4458-201ENST00000578872 75 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC005412.1-201ENST00000580812 1049 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 BNIP3P24-201ENST00000593398 557 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 BPIFA4P-203ENST00000603168 689 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AL133507.1-201ENST00000605269 557 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC243773.3-201ENST00000613270 256 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 BMS1P21-201ENST00000634565 365 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 AC009093.8-201ENST00000641769 292 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 ZNF736P9Y-201ENST00000439586 1345 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 OR5BR1P-201ENST00000524992 1330 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 DDX43P2-201ENST00000604753 1354 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL28A1Q2UY09 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.12□□□□□ -1.75
COL28A1Q2UY09 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms