Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC1.89□□□□□ -2.11
PRKDCP78527 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
PRKDCP78527 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.89□□□□□ -2.11
PRKDCP78527 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC1.89□□□□□ -2.11
PRKDCP78527 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 MTND5P6-201ENST00000422338 1798 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AL353729.1-201ENST00000425044 720 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC1.89□□□□□ -2.11
PRKDCP78527 RPS20P5-201ENST00000434808 360 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 SNORA31.1-201ENST00000515993 133 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 SNORA31.5-201ENST00000516190 133 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC1.89□□□□□ -2.11
PRKDCP78527 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC1.89□□□□□ -2.11
PRKDCP78527 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.89□□□□□ -2.11
PRKDCP78527 AL031985.3-201ENST00000565390 2449 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC1.89□□□□□ -2.11
PRKDCP78527 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC1.89□□□□□ -2.11
PRKDCP78527 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC1.89□□□□□ -2.11
PRKDCP78527 GSTA9P-201ENST00000406231 611 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC1.89□□□□□ -2.11
PRKDCP78527 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC1.89□□□□□ -2.11
PRKDCP78527 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.89□□□□□ -2.11
PRKDCP78527 AC023813.4-201ENST00000607580 580 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AL158196.1-201ENST00000616786 434 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC1.89□□□□□ -2.11
PRKDCP78527 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC1.89□□□□□ -2.11
PRKDCP78527 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC1.89□□□□□ -2.11
PRKDCP78527 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC1.89□□□□□ -2.11
PRKDCP78527 AC087190.4-201ENST00000574616 8334 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
PRKDCP78527 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC1.89□□□□□ -2.11
PRKDCP78527 RPL21P75-201ENST00000396599 483 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 RPL21P1-201ENST00000399532 476 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 RPL21P28-201ENST00000401418 483 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AL592114.1-201ENST00000403842 483 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AC108667.1-201ENST00000428618 249 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC1.89□□□□□ -2.11
PRKDCP78527 RPL21P16-201ENST00000495531 483 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
PRKDCP78527 AL110115.1-201ENST00000614396 364 ntBASIC1.89□□□□□ -2.11
PRKDCP78527 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
PRKDCP78527 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
PRKDCP78527 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
PRKDCP78527 MIR1276-201ENST00000408707 83 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 RPS12P23-201ENST00000419579 400 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 ATP5J2P3-201ENST00000451550 258 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 MTCO3P11-201ENST00000455103 774 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 AC068587.2-201ENST00000478386 781 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 ASNSP4-201ENST00000511103 447 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC1.88□□□□□ -2.11
PRKDCP78527 AL355493.4-201ENST00000618530 292 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 U7.8-201ENST00000619968 63 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
PRKDCP78527 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC1.88□□□□□ -2.11
PRKDCP78527 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
PRKDCP78527 RPL29P29-201ENST00000448725 423 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 RALGAPA1P1-201ENST00000443361 6232 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC1.88□□□□□ -2.11
PRKDCP78527 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
PRKDCP78527 AC092593.1-201ENST00000515413 1815 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
PRKDCP78527 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
PRKDCP78527 AL024474.1-201ENST00000404655 591 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
PRKDCP78527 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC1.88□□□□□ -2.11
PRKDCP78527 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC1.88□□□□□ -2.11
PRKDCP78527 AP000942.1-201ENST00000463969 747 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC1.88□□□□□ -2.11
PRKDCP78527 AC021146.1-201ENST00000511202 716 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 AC006272.2-201ENST00000594725 163 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 WISP1-OT1-201ENST00000602893 642 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 AL356490.1-201ENST00000623079 479 ntBASIC1.88□□□□□ -2.11
PRKDCP78527 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC1.88□□□□□ -2.11
PRKDCP78527 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
PRKDCP78527 GABPAP-201ENST00000419271 1356 ntBASIC1.87□□□□□ -2.11
PRKDCP78527 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC1.87□□□□□ -2.11
PRKDCP78527 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC1.87□□□□□ -2.11
PRKDCP78527 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
PRKDCP78527 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
PRKDCP78527 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
PRKDCP78527 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
PRKDCP78527 AL139276.1-201ENST00000311910 1001 ntBASIC1.87□□□□□ -2.11
PRKDCP78527 MIR423-201ENST00000362201 94 ntBASIC1.87□□□□□ -2.11
PRKDCP78527 SNORD56.3-201ENST00000363507 71 ntBASIC1.87□□□□□ -2.11
PRKDCP78527 AK6P1-201ENST00000540219 478 ntBASIC1.87□□□□□ -2.11
PRKDCP78527 GNAI2P1-201ENST00000541815 315 ntBASIC1.87□□□□□ -2.11
PRKDCP78527 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC1.87□□□□□ -2.11
PRKDCP78527 AC020895.1-201ENST00000595362 272 ntBASIC1.87□□□□□ -2.11
PRKDCP78527 AP004247.3-201ENST00000608682 624 ntBASIC1.87□□□□□ -2.11
PRKDCP78527 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC1.87□□□□□ -2.11
PRKDCP78527 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC1.87□□□□□ -2.11
PRKDCP78527 MTND5P28-201ENST00000438005 1594 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms