Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC084824.1-201ENST00000550917 1005 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.27□□□□□ -1.73
PTPN9P43378 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN9P43378 CYCSP2-201ENST00000558168 301 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 HSPE1P3-201ENST00000559254 309 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AGGF1P8-201ENST00000562979 1000 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN9P43378 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN9P43378 NBR2-204ENST00000587322 63 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN9P43378 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN9P43378 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN9P43378 AC243773.3-201ENST00000613270 256 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC008083.4-201ENST00000615076 444 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 AF246928.1-201ENST00000623768 87 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC004777.1-201ENST00000624317 287 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN9P43378 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN9P43378 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN9P43378 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN9P43378 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN9P43378 SNORA62-201ENST00000365493 153 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 SNORD116-9-201ENST00000384000 95 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 SNORA51.6-201ENST00000384151 125 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 SNORD116-3-201ENST00000384287 95 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 RNU6-1226P-201ENST00000384317 107 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 SNORD116-7-201ENST00000384404 95 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 SNORD116-5-201ENST00000384462 95 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 RNU11-4P-201ENST00000391149 133 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 SSXP10-201ENST00000402595 565 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 AC108032.1-201ENST00000416706 207 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN9P43378 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN9P43378 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN9P43378 ELOCP18-201ENST00000434209 337 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN9P43378 MTCYBP39-201ENST00000437562 491 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN9P43378 UBE2D3P4-201ENST00000441973 436 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 MTND2P4-201ENST00000445034 1004 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 VN1R10P-201ENST00000447106 875 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 MTND1P29-201ENST00000448112 647 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 RPL7P31-201ENST00000450192 724 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN9P43378 RPS23P7-201ENST00000466210 444 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC092757.1-201ENST00000467293 467 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 RN7SL271P-201ENST00000487601 295 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC026979.1-201ENST00000492525 396 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.26□□□□□ -1.73
PTPN9P43378 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN9P43378 MRPL49P2-201ENST00000521066 465 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC239860.2-201ENST00000525886 270 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.26□□□□□ -1.73
PTPN9P43378 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN9P43378 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN9P43378 AL161713.1-201ENST00000555538 145 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 NDUFAF4P1-201ENST00000559425 519 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN9P43378 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN9P43378 AC067852.4-201ENST00000590314 478 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN9P43378 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 AC015726.1-201ENST00000602353 681 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC083899.3-201ENST00000603413 594 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 RNU6-88P-201ENST00000606801 100 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC024560.3-201ENST00000608482 349 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN9P43378 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN9P43378 PCMTD1P7-201ENST00000634506 357 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC127502.3-201ENST00000636170 1206 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC068137.4-201ENST00000638485 296 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 AC099063.3-201ENST00000642066 185 ntBASIC4.26□□□□□ -1.73
PTPN9P43378 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PTPN9P43378 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN9P43378 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN9P43378 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN9P43378 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.25□□□□□ -1.73
PTPN9P43378 AC008725.1-201ENST00000605123 2263 ntBASIC4.25□□□□□ -1.73
PTPN9P43378 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.25□□□□□ -1.73
PTPN9P43378 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTPN9P43378 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTPN9P43378 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.25□□□□□ -1.73
PTPN9P43378 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.25□□□□□ -1.73
PTPN9P43378 OR11H4-201ENST00000315409 1082 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms