Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PDCL2P2-201ENST00000533651 189 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX3P41225 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX3P41225 AC009094.1-201ENST00000564443 426 ntBASIC3.6□□□□□ -1.83
SOX3P41225 MTCYBP28-201ENST00000566728 1132 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX3P41225 AC034105.4-201ENST00000568304 277 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AL354943.1-201ENST00000572103 781 ntBASIC3.6□□□□□ -1.83
SOX3P41225 MIR4504-201ENST00000577413 92 ntBASIC3.6□□□□□ -1.83
SOX3P41225 OR4K7P-201ENST00000580232 945 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC006130.2-201ENST00000586202 326 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC067852.4-201ENST00000590314 478 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AL451086.1-201ENST00000605596 223 ntBASIC3.6□□□□□ -1.83
SOX3P41225 HSPE1P14-201ENST00000605812 302 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC113194.1-201ENST00000606037 500 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC091946.2-201ENST00000606105 291 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC092954.1-201ENST00000609121 445 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.6□□□□□ -1.83
SOX3P41225 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX3P41225 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX3P41225 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
SOX3P41225 AC107982.1-201ENST00000507171 1300 ntBASIC3.6□□□□□ -1.83
SOX3P41225 Z73965.1-201ENST00000623412 2297 ntBASIC3.6□□□□□ -1.83
SOX3P41225 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SOX3P41225 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX3P41225 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SOX3P41225 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX3P41225 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SOX3P41225 SAGE4P-201ENST00000442271 3381 ntBASIC3.6□□□□□ -1.83
SOX3P41225 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SOX3P41225 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX3P41225 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.83
SOX3P41225 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
SOX3P41225 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX3P41225 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX3P41225 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX3P41225 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX3P41225 MIR423-201ENST00000362201 94 ntBASIC3.59□□□□□ -1.83
SOX3P41225 RNU6-1243P-201ENST00000364028 107 ntBASIC3.59□□□□□ -1.83
SOX3P41225 RNU1-85P-201ENST00000364127 164 ntBASIC3.59□□□□□ -1.83
SOX3P41225 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX3P41225 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX3P41225 MIR649-201ENST00000384843 97 ntBASIC3.59□□□□□ -1.83
SOX3P41225 MIR554-201ENST00000384874 96 ntBASIC3.59□□□□□ -1.83
SOX3P41225 MIR3074-201ENST00000384885 81 ntBASIC3.59□□□□□ -1.83
SOX3P41225 RN7SKP159-201ENST00000410657 292 ntBASIC3.59□□□□□ -1.83
SOX3P41225 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.59□□□□□ -1.83
SOX3P41225 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.59□□□□□ -1.83
SOX3P41225 AC006960.1-201ENST00000419980 153 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 MTND1P32-201ENST00000433043 938 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX3P41225 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.59□□□□□ -1.83
SOX3P41225 HMGB1P37-201ENST00000439613 609 ntBASIC3.59□□□□□ -1.83
SOX3P41225 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 RN7SL542P-201ENST00000467147 294 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AC087879.1-201ENST00000474343 374 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AC104090.1-201ENST00000506341 1171 ntBASIC3.59□□□□□ -1.83
SOX3P41225 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.59□□□□□ -1.83
SOX3P41225 SNORA3.4-201ENST00000515969 96 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AC023632.4-201ENST00000517783 191 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX3P41225 MTCO1P49-201ENST00000523429 802 ntBASIC3.59□□□□□ -1.83
SOX3P41225 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 MED28P5-201ENST00000528254 438 ntBASIC3.59□□□□□ -1.83
SOX3P41225 UBTFL10-201ENST00000528532 562 ntBASIC3.59□□□□□ -1.83
SOX3P41225 OR4A12P-201ENST00000530847 918 ntBASIC3.59□□□□□ -1.83
SOX3P41225 CYCSP30-201ENST00000546447 172 ntBASIC3.59□□□□□ -1.83
SOX3P41225 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 DUXAP6-201ENST00000553858 601 ntBASIC3.59□□□□□ -1.83
SOX3P41225 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 MTND3P12-201ENST00000559068 328 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AL133457.1-201ENST00000564251 987 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 MIR1254-2-201ENST00000579553 63 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.59□□□□□ -1.83
SOX3P41225 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.59□□□□□ -1.83
SOX3P41225 AL357094.1-201ENST00000603845 844 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.59□□□□□ -1.83
SOX3P41225 AC121761.2-201ENST00000617300 689 ntBASIC3.59□□□□□ -1.83
SOX3P41225 Z99129.2-201ENST00000619967 314 ntBASIC3.59□□□□□ -1.83
SOX3P41225 AP000484.1-201ENST00000620067 1252 ntBASIC3.59□□□□□ -1.83
SOX3P41225 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
SOX3P41225 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.59□□□□□ -1.83
SOX3P41225 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SOX3P41225 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SOX3P41225 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.59□□□□□ -1.84
SOX3P41225 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.84
SOX3P41225 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
SOX3P41225 AC022893.2-201ENST00000564832 3296 ntBASIC3.59□□□□□ -1.84
SOX3P41225 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.58□□□□□ -1.84
SOX3P41225 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.58□□□□□ -1.84
SOX3P41225 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SOX3P41225 OR4A15-201ENST00000314706 1035 ntBASIC3.58□□□□□ -1.84
SOX3P41225 RNU6-621P-201ENST00000364752 109 ntBASIC3.58□□□□□ -1.84
SOX3P41225 AL138878.1-201ENST00000405131 347 ntBASIC3.58□□□□□ -1.84
SOX3P41225 Z98941.1-201ENST00000407764 100 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms