Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.26□□□□□ -1.73
CUX1P39880 AL590290.1-201ENST00000405336 380 ntBASIC4.26□□□□□ -1.73
CUX1P39880 AL355379.1-201ENST00000405542 640 ntBASIC4.26□□□□□ -1.73
CUX1P39880 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.26□□□□□ -1.73
CUX1P39880 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.26□□□□□ -1.73
CUX1P39880 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.26□□□□□ -1.73
CUX1P39880 AL356320.1-201ENST00000429616 163 ntBASIC4.26□□□□□ -1.73
CUX1P39880 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.26□□□□□ -1.73
CUX1P39880 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.26□□□□□ -1.73
CUX1P39880 RN7SL636P-201ENST00000497504 294 ntBASIC4.26□□□□□ -1.73
CUX1P39880 MTCO1P9-201ENST00000505577 1534 ntBASIC4.26□□□□□ -1.73
CUX1P39880 AC118282.1-201ENST00000506408 765 ntBASIC4.26□□□□□ -1.73
CUX1P39880 AC119751.1-201ENST00000513357 765 ntBASIC4.26□□□□□ -1.73
CUX1P39880 AC108471.1-201ENST00000513977 287 ntBASIC4.26□□□□□ -1.73
CUX1P39880 OR8L1P-201ENST00000534005 955 ntBASIC4.26□□□□□ -1.73
CUX1P39880 ERP27-202ENST00000540097 993 ntTSL 2 BASIC4.26□□□□□ -1.73
CUX1P39880 DEFB122-202ENST00000569013 197 ntBASIC4.26□□□□□ -1.73
CUX1P39880 AC134882.1-201ENST00000603738 1676 ntBASIC4.26□□□□□ -1.73
CUX1P39880 U4.3-201ENST00000621047 82 ntBASIC4.26□□□□□ -1.73
CUX1P39880 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
CUX1P39880 GTF2H2B-203ENST00000508065 1432 ntBASIC4.26□□□□□ -1.73
CUX1P39880 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC4.26□□□□□ -1.73
CUX1P39880 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CUX1P39880 RNU6-249P-201ENST00000363016 102 ntBASIC4.26□□□□□ -1.73
CUX1P39880 RNU6-482P-201ENST00000391068 107 ntBASIC4.26□□□□□ -1.73
CUX1P39880 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.26□□□□□ -1.73
CUX1P39880 RNU4-26P-201ENST00000410270 107 ntBASIC4.26□□□□□ -1.73
CUX1P39880 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.26□□□□□ -1.73
CUX1P39880 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC4.26□□□□□ -1.73
CUX1P39880 HMGN2P3-201ENST00000433603 273 ntBASIC4.26□□□□□ -1.73
CUX1P39880 HMGN2P5-201ENST00000436882 273 ntBASIC4.26□□□□□ -1.73
CUX1P39880 AL592437.1-201ENST00000443781 492 ntBASIC4.26□□□□□ -1.73
CUX1P39880 FAM103A2P-201ENST00000444122 354 ntBASIC4.26□□□□□ -1.73
CUX1P39880 HMGB3P8-201ENST00000449709 577 ntBASIC4.26□□□□□ -1.73
CUX1P39880 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CUX1P39880 IGKV2-36-201ENST00000519999 223 ntBASIC4.26□□□□□ -1.73
CUX1P39880 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.26□□□□□ -1.73
CUX1P39880 AC007938.3-201ENST00000604965 623 ntBASIC4.26□□□□□ -1.73
CUX1P39880 AC078899.5-201ENST00000612475 178 ntBASIC4.26□□□□□ -1.73
CUX1P39880 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.25□□□□□ -1.73
CUX1P39880 HSPA8P4-201ENST00000511877 1920 ntBASIC4.25□□□□□ -1.73
CUX1P39880 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CUX1P39880 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.25□□□□□ -1.73
CUX1P39880 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.25□□□□□ -1.73
CUX1P39880 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CUX1P39880 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC4.25□□□□□ -1.73
CUX1P39880 AL589765.3-201ENST00000446084 462 ntBASIC4.25□□□□□ -1.73
CUX1P39880 AL590399.6-201ENST00000446396 307 ntBASIC4.25□□□□□ -1.73
CUX1P39880 SEPT7P3-201ENST00000455017 621 ntBASIC4.25□□□□□ -1.73
CUX1P39880 AC132942.1-201ENST00000486753 483 ntBASIC4.25□□□□□ -1.73
CUX1P39880 RPL36AP51-201ENST00000487216 318 ntBASIC4.25□□□□□ -1.73
CUX1P39880 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC4.25□□□□□ -1.73
CUX1P39880 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.25□□□□□ -1.73
CUX1P39880 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.25□□□□□ -1.73
CUX1P39880 HDX-206ENST00000506585 6158 ntTSL 2 BASIC4.25□□□□□ -1.73
CUX1P39880 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CUX1P39880 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.24□□□□□ -1.73
CUX1P39880 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
CUX1P39880 MIR181B1-201ENST00000385240 110 ntBASIC4.24□□□□□ -1.73
CUX1P39880 HIGD1AP2-201ENST00000446367 280 ntBASIC4.24□□□□□ -1.73
CUX1P39880 RPS27P29-201ENST00000463110 252 ntBASIC4.24□□□□□ -1.73
CUX1P39880 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC4.24□□□□□ -1.73
CUX1P39880 AC016590.3-201ENST00000611171 753 ntBASIC4.24□□□□□ -1.73
CUX1P39880 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
CUX1P39880 AC012078.1-201ENST00000405035 1646 ntBASIC4.24□□□□□ -1.73
CUX1P39880 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
CUX1P39880 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
CUX1P39880 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CUX1P39880 RPS3AP26-201ENST00000398259 784 ntBASIC4.23□□□□□ -1.73
CUX1P39880 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC4.23□□□□□ -1.73
CUX1P39880 OR2B8P-201ENST00000432841 938 ntBASIC4.23□□□□□ -1.73
CUX1P39880 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.23□□□□□ -1.73
CUX1P39880 MIR1273D-201ENST00000577266 86 ntBASIC4.23□□□□□ -1.73
CUX1P39880 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC4.23□□□□□ -1.73
CUX1P39880 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CUX1P39880 MIR148B-201ENST00000362252 99 ntBASIC4.22□□□□□ -1.73
CUX1P39880 EI24P2-201ENST00000397776 1076 ntBASIC4.22□□□□□ -1.73
CUX1P39880 HMGB3P12-201ENST00000438745 556 ntBASIC4.22□□□□□ -1.73
CUX1P39880 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.22□□□□□ -1.73
CUX1P39880 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CUX1P39880 NPM1P35-201ENST00000533043 868 ntBASIC4.22□□□□□ -1.73
CUX1P39880 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC4.22□□□□□ -1.73
CUX1P39880 Z99129.2-201ENST00000619967 314 ntBASIC4.22□□□□□ -1.73
CUX1P39880 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.22□□□□□ -1.73
CUX1P39880 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CUX1P39880 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.22□□□□□ -1.73
CUX1P39880 PROS2P-201ENST00000474651 1951 ntBASIC4.22□□□□□ -1.73
CUX1P39880 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
CUX1P39880 AL135786.1-201ENST00000415892 214 ntBASIC4.21□□□□□ -1.73
CUX1P39880 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC4.21□□□□□ -1.73
CUX1P39880 RPS12P2-201ENST00000439728 269 ntBASIC4.21□□□□□ -1.73
CUX1P39880 AC011816.1-201ENST00000441346 546 ntBASIC4.21□□□□□ -1.73
CUX1P39880 AC108210.2-201ENST00000503681 201 ntBASIC4.21□□□□□ -1.73
CUX1P39880 AC034244.2-201ENST00000514668 858 ntBASIC4.21□□□□□ -1.73
CUX1P39880 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.21□□□□□ -1.73
CUX1P39880 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.21□□□□□ -1.73
CUX1P39880 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC4.21□□□□□ -1.73
CUX1P39880 AC022960.2-201ENST00000616300 666 ntBASIC4.21□□□□□ -1.73
CUX1P39880 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.21□□□□□ -1.73
CUX1P39880 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.21□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms