Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL118496.1-201ENST00000440201 1812 ntBASIC3.52□□□□□ -1.85
BRCA1P38398 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
BRCA1P38398 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
BRCA1P38398 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.51□□□□□ -1.85
BRCA1P38398 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
BRCA1P38398 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
BRCA1P38398 AC127526.1-201ENST00000417526 366 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.51□□□□□ -1.85
BRCA1P38398 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.51□□□□□ -1.85
BRCA1P38398 RWDD4P2-201ENST00000426392 563 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 MTND2P8-201ENST00000450555 1025 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 TPMTP4-201ENST00000450749 678 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 RPL23AP23-201ENST00000452590 471 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 AC090525.1-201ENST00000479116 478 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 RWDD4P1-201ENST00000488019 565 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 SCGB1D5P-201ENST00000515134 247 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 SMARCE1P4-201ENST00000523647 241 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 AC107016.2-201ENST00000547968 190 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 AC022884.3-201ENST00000579571 248 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 MIR6817-201ENST00000615588 66 ntBASIC3.51□□□□□ -1.85
BRCA1P38398 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
BRCA1P38398 AL592494.2-201ENST00000425455 1548 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AL360182.1-201ENST00000397433 468 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.5□□□□□ -1.85
BRCA1P38398 MTND4P11-201ENST00000417020 1058 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 HMGB1P18-201ENST00000438801 619 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC3.5□□□□□ -1.85
BRCA1P38398 AL353898.1-201ENST00000444055 238 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AL162389.1-201ENST00000449233 177 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 Y_RNA.676-201ENST00000516393 96 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AF186190.1-201ENST00000517470 480 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3.5□□□□□ -1.85
BRCA1P38398 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.5□□□□□ -1.85
BRCA1P38398 AC135803.1-201ENST00000608748 565 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.5□□□□□ -1.85
BRCA1P38398 MIR6715B-201ENST00000637172 77 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
BRCA1P38398 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.5□□□□□ -1.85
BRCA1P38398 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
BRCA1P38398 MIR184-201ENST00000384962 84 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AC110754.1-201ENST00000399740 601 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AMD1P2-201ENST00000412936 992 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AC048351.1-201ENST00000420064 602 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.5□□□□□ -1.85
BRCA1P38398 AL365396.1-201ENST00000430854 671 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.5□□□□□ -1.85
BRCA1P38398 HMGB3P11-201ENST00000440127 604 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 HMGB3P21-201ENST00000452483 547 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.5□□□□□ -1.85
BRCA1P38398 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.5□□□□□ -1.85
BRCA1P38398 AC010683.1-201ENST00000473673 378 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.5□□□□□ -1.85
BRCA1P38398 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.5□□□□□ -1.85
BRCA1P38398 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.5□□□□□ -1.85
BRCA1P38398 AC021146.1-201ENST00000511202 716 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 RN7SKP283-201ENST00000517197 270 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.5□□□□□ -1.85
BRCA1P38398 AC074029.2-201ENST00000551045 634 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 AC091903.1-201ENST00000624322 454 ntBASIC3.5□□□□□ -1.85
BRCA1P38398 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
BRCA1P38398 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
BRCA1P38398 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
BRCA1P38398 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
BRCA1P38398 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
BRCA1P38398 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.49□□□□□ -1.85
BRCA1P38398 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.49□□□□□ -1.85
BRCA1P38398 MIR592-201ENST00000384959 97 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 AL138827.1-201ENST00000402666 306 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 MIR1183-201ENST00000408856 89 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 AL590623.1-201ENST00000427864 105 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 MRPS33P4-201ENST00000434892 317 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.49□□□□□ -1.85
BRCA1P38398 SRIP1-201ENST00000489235 288 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 RNU6-760P-201ENST00000516078 97 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.49□□□□□ -1.85
BRCA1P38398 EEF1A1P37-201ENST00000522748 715 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.49□□□□□ -1.85
BRCA1P38398 SNORD53-201ENST00000579969 78 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 AC007318.2-201ENST00000620999 243 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
BRCA1P38398 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
BRCA1P38398 MTND4P10-201ENST00000446199 1363 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 AC007342.9-201ENST00000623877 1385 ntBASIC3.49□□□□□ -1.85
BRCA1P38398 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.49□□□□□ -1.85
BRCA1P38398 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.48□□□□□ -1.85
BRCA1P38398 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
BRCA1P38398 RNU6-666P-201ENST00000363499 107 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.48□□□□□ -1.85
BRCA1P38398 CCNB2P1-201ENST00000399411 1150 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 RNU6-55P-201ENST00000411092 107 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 RNU6-954P-201ENST00000411355 107 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.48□□□□□ -1.85
BRCA1P38398 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.48□□□□□ -1.85
BRCA1P38398 BX679664.1-201ENST00000434429 253 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.48□□□□□ -1.85
BRCA1P38398 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC3.48□□□□□ -1.85
BRCA1P38398 RPS20P22-201ENST00000473700 357 ntBASIC3.48□□□□□ -1.85
BRCA1P38398 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC3.48□□□□□ -1.85
BRCA1P38398 KLHL2P1-201ENST00000508691 521 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms