Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD4P09016 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD4P09016 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
HOXD4P09016 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD4P09016 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXD4P09016 YPEL5P3-201ENST00000547227 352 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 CCNG2P1-201ENST00000549521 1000 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 MRPS36P5-201ENST00000551909 298 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 AC074029.1-201ENST00000552531 1044 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 AC022968.1-201ENST00000567372 442 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 AC145350.1-201ENST00000567426 208 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXD4P09016 AP001269.3-201ENST00000588718 329 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD4P09016 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXD4P09016 AC092954.1-201ENST00000609121 445 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 AP005137.2-201ENST00000609238 400 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD4P09016 AC064801.1-201ENST00000612025 407 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 MIR6864-201ENST00000617935 70 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD4P09016 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD4P09016 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXD4P09016 AF001550.2-201ENST00000636643 217 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.53□□□□□ -1.84
HOXD4P09016 AC046144.1-201ENST00000478559 1853 ntBASIC3.53□□□□□ -1.84
HOXD4P09016 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXD4P09016 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXD4P09016 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXD4P09016 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD4P09016 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD4P09016 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD4P09016 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HOXD4P09016 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD4P09016 snoZ40.1-201ENST00000364540 72 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 SNORD116.1-201ENST00000365628 92 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD4P09016 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
HOXD4P09016 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD4P09016 AL008987.1-201ENST00000415528 237 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD4P09016 AL009174.1-201ENST00000426577 416 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 NPM1P34-201ENST00000428821 893 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 ARF4P2-201ENST00000430209 526 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD4P09016 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD4P09016 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD4P09016 PDSS1P2-201ENST00000449397 678 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 MRPL42P4-201ENST00000453267 443 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 MRPL35P4-201ENST00000453682 566 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 BX248409.1-201ENST00000455497 255 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD4P09016 AC113347.3-201ENST00000509113 148 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 NDUFA5P2-201ENST00000519723 344 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD4P09016 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.52□□□□□ -1.85
HOXD4P09016 AC092747.2-201ENST00000545069 983 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD4P09016 AC009094.1-201ENST00000564443 426 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD4P09016 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD4P09016 AP001180.3-201ENST00000582221 145 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AC017100.2-201ENST00000584628 355 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AC022146.1-201ENST00000595307 847 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD4P09016 AL161756.2-201ENST00000604597 246 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD4P09016 AL592148.2-201ENST00000612210 372 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD4P09016 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD4P09016 AC119744.1-201ENST00000454746 1715 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
HOXD4P09016 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXD4P09016 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.52□□□□□ -1.85
HOXD4P09016 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD4P09016 ZNF33CP-201ENST00000432492 2030 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 RNU6-707P-201ENST00000364647 95 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 RNU6-413P-201ENST00000384115 107 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HOXD4P09016 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD4P09016 AL590084.1-201ENST00000407885 387 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC008280.1-201ENST00000418851 412 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC087650.1-201ENST00000431445 468 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD4P09016 TBCAP1-201ENST00000436520 327 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC092809.1-201ENST00000441469 474 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC010307.1-201ENST00000467206 836 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 AC087385.1-201ENST00000475062 312 ntBASIC3.51□□□□□ -1.85
HOXD4P09016 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD4P09016 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms