Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.04□□□□□ -1.6
NUP88Q99567 RN7SL600P-201ENST00000581811 299 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 AP001004.1-201ENST00000582468 324 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 RPL7P50-201ENST00000600588 727 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 AL020997.2-201ENST00000602607 184 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 AC010201.1-201ENST00000605051 540 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 AL109618.2-201ENST00000605527 211 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 Z98200.1-201ENST00000607298 470 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.04□□□□□ -1.6
NUP88Q99567 AL021997.2-201ENST00000615674 271 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 SNX18P1Y-201ENST00000616231 511 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NUP88Q99567 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.04□□□□□ -1.6
NUP88Q99567 OR51H2P-202ENST00000641424 3046 ntBASIC5.04□□□□□ -1.6
NUP88Q99567 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NUP88Q99567 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.03□□□□□ -1.6
NUP88Q99567 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 RNU6-433P-201ENST00000363216 104 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 RNU6-501P-201ENST00000364072 100 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 RNU6-289P-201ENST00000364093 107 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 SNORA37-201ENST00000384504 129 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL031679.1-201ENST00000400616 525 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 HMGB1P17-201ENST00000403495 628 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.03□□□□□ -1.6
NUP88Q99567 RN7SKP235-201ENST00000410662 305 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 RN7SKP263-201ENST00000411194 309 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC5.03□□□□□ -1.6
NUP88Q99567 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC5.03□□□□□ -1.6
NUP88Q99567 FNDC3CP-201ENST00000420795 1155 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL157831.1-201ENST00000426134 473 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 VN1R108P-201ENST00000431580 830 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AP000936.2-201ENST00000447151 681 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.03□□□□□ -1.6
NUP88Q99567 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.03□□□□□ -1.6
NUP88Q99567 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.03□□□□□ -1.6
NUP88Q99567 AC116337.2-201ENST00000477662 156 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC5.03□□□□□ -1.6
NUP88Q99567 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC5.03□□□□□ -1.6
NUP88Q99567 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC5.03□□□□□ -1.6
NUP88Q99567 HMGB1P19-201ENST00000517578 577 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 RPL12P22-201ENST00000519073 490 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC5.03□□□□□ -1.6
NUP88Q99567 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC5.03□□□□□ -1.6
NUP88Q99567 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.03□□□□□ -1.6
NUP88Q99567 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.03□□□□□ -1.6
NUP88Q99567 GTF2IP22-201ENST00000554443 182 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL161713.1-201ENST00000555538 145 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.03□□□□□ -1.6
NUP88Q99567 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 OR4G1P-201ENST00000588632 938 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.03□□□□□ -1.6
NUP88Q99567 AP001981.2-201ENST00000603241 418 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL161729.3-201ENST00000603533 673 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 RN7SKP299-201ENST00000606679 301 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AC080013.4-201ENST00000607624 649 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL451064.1-201ENST00000607718 471 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AC012360.2-201ENST00000609349 391 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AC025588.4-201ENST00000615802 908 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.03□□□□□ -1.6
NUP88Q99567 AC055839.1-201ENST00000634467 498 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.03□□□□□ -1.6
NUP88Q99567 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.03□□□□□ -1.6
NUP88Q99567 PABPC1P9-201ENST00000426076 1612 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL356473.1-201ENST00000406203 1408 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 AL022578.1-201ENST00000439330 1433 ntBASIC5.03□□□□□ -1.6
NUP88Q99567 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
NUP88Q99567 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
NUP88Q99567 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
NUP88Q99567 ATP8A2P3-201ENST00000426792 1536 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.02□□□□□ -1.61
NUP88Q99567 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
NUP88Q99567 MFSD8-242ENST00000641690 4199 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.02□□□□□ -1.61
NUP88Q99567 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.02□□□□□ -1.61
NUP88Q99567 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NUP88Q99567 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
NUP88Q99567 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC5.02□□□□□ -1.61
NUP88Q99567 AL049555.1-201ENST00000562834 1933 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NUP88Q99567 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
NUP88Q99567 RPL23AP57-201ENST00000332361 466 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
NUP88Q99567 MIR372-201ENST00000362225 67 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 RNU1-94P-201ENST00000362627 173 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 RNA5SP175-201ENST00000364275 119 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 AC019155.1-201ENST00000382242 574 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 AC025750.1-201ENST00000399891 379 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 AL022722.2-201ENST00000402519 180 ntBASIC5.02□□□□□ -1.61
NUP88Q99567 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms