Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MIR133B-201ENST00000362210 119 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 RNA5SP258-201ENST00000362750 119 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 RNU6-996P-201ENST00000365438 107 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 RNU6-606P-201ENST00000384721 111 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 SSXP10-201ENST00000402595 565 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 RNU6-1148P-201ENST00000410992 104 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 RN7SKP140-201ENST00000411196 284 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC009302.1-201ENST00000417147 390 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC092013.1-201ENST00000438795 332 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AP001992.1-205ENST00000462248 379 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC092754.1-201ENST00000472975 479 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 RN7SL809P-201ENST00000482040 297 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 RPL30P11-201ENST00000495304 339 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC093853.1-201ENST00000515689 483 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 FTH1P11-201ENST00000517577 551 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 HMGB1P40-201ENST00000525121 540 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AP004607.2-201ENST00000533949 322 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 SETP2-201ENST00000553886 926 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC005341.1-201ENST00000571086 708 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC010591.1-201ENST00000603941 649 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AL139124.1-201ENST00000609123 421 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 OR6R2P-201ENST00000609216 300 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AL596245.1-201ENST00000618994 362 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 uc_338.7-201ENST00000621834 124 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC074101.1-201ENST00000637861 241 ntBASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
PTCHD1Q96NR3 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
PTCHD1Q96NR3 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.6
PTCHD1Q96NR3 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.09□□□□□ -1.6
PTCHD1Q96NR3 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
PTCHD1Q96NR3 AC011460.1-201ENST00000636268 1834 ntBASIC5.09□□□□□ -1.6
PTCHD1Q96NR3 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
PTCHD1Q96NR3 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
PTCHD1Q96NR3 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 SAMMSON-213ENST00000641336 1521 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC005332.5-201ENST00000591222 2919 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AL592148.3-201ENST00000608771 2646 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 SNORA5.1-201ENST00000384275 131 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 HSPA8P15-201ENST00000401676 786 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AL138799.3-201ENST00000438968 350 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC093156.1-201ENST00000440382 670 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 RPS11P7-201ENST00000442125 465 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 MED28P3-201ENST00000444288 531 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 NIPA2P5-201ENST00000452282 464 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC006512.1-201ENST00000468816 291 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 RPS26P39-201ENST00000469206 341 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 HSPD1P15-201ENST00000505573 1122 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 RNU6-1314P-201ENST00000517139 104 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC068831.4-201ENST00000556118 109 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 RN7SL802P-201ENST00000577858 299 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 NF1P5-201ENST00000588287 448 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 KC877982.1-201ENST00000602313 470 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AP000769.2-201ENST00000602344 396 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC008782.1-201ENST00000603386 430 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 uc_338.12-201ENST00000616344 181 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 C2orf27A-204ENST00000623058 969 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 AL159972.1-201ENST00000625150 448 ntBASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.08□□□□□ -1.6
PTCHD1Q96NR3 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms