Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC245128.3-201ENST00000594721 748 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC090115.4-201ENST00000609970 188 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC117490.2-201ENST00000610042 594 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 AL162574.2-201ENST00000614618 657 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC42Q96M95 AC010338.1-201ENST00000621823 717 ntBASIC3.16□□□□□ -1.9
CCDC42Q96M95 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC42Q96M95 AL161431.1-201ENST00000618966 4205 ntBASIC3.15□□□□□ -1.9
CCDC42Q96M95 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.15□□□□□ -1.9
CCDC42Q96M95 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC42Q96M95 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.15□□□□□ -1.9
CCDC42Q96M95 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC42Q96M95 RPL7P8-201ENST00000411964 730 ntBASIC3.15□□□□□ -1.91
CCDC42Q96M95 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC42Q96M95 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC42Q96M95 CKS1BP5-201ENST00000434172 273 ntBASIC3.15□□□□□ -1.91
CCDC42Q96M95 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC42Q96M95 COX6CP2-201ENST00000444980 225 ntBASIC3.15□□□□□ -1.91
CCDC42Q96M95 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC42Q96M95 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC42Q96M95 AC117440.1-201ENST00000474107 571 ntBASIC3.15□□□□□ -1.91
CCDC42Q96M95 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC42Q96M95 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC42Q96M95 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC42Q96M95 AC067904.2-201ENST00000517322 1283 ntBASIC3.15□□□□□ -1.91
CCDC42Q96M95 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC42Q96M95 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC42Q96M95 MIR6864-201ENST00000617935 70 ntBASIC3.15□□□□□ -1.91
CCDC42Q96M95 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC42Q96M95 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC42Q96M95 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC42Q96M95 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC42Q96M95 AL136164.4-201ENST00000625013 2135 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC42Q96M95 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC42Q96M95 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC42Q96M95 MIR181A2-201ENST00000384863 110 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 DNAJC19P6-201ENST00000401853 280 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 OR7L1P-201ENST00000456181 380 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 RPL37P3-201ENST00000456825 293 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 AC096992.1-201ENST00000459808 709 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 VN1R17P-201ENST00000472048 1090 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 RN7SL499P-201ENST00000481141 276 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC42Q96M95 SAP18P1-201ENST00000512058 390 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 AC131902.3-201ENST00000611767 581 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 AC107871.2-201ENST00000612894 502 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC42Q96M95 U6.105-201ENST00000637379 88 ntBASIC3.14□□□□□ -1.91
CCDC42Q96M95 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC42Q96M95 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC42Q96M95 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC42Q96M95 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC42Q96M95 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 RNU6-600P-201ENST00000362524 99 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 SNORA51.2-201ENST00000364595 132 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 MIR512-1-201ENST00000384913 84 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 MIR183-201ENST00000384958 110 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 AL590004.2-201ENST00000404787 371 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 RNA5SP129-201ENST00000410276 118 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 RN7SKP220-201ENST00000410611 288 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 RPL7P10-201ENST00000417407 739 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC005326.1-201ENST00000429197 123 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC104332.2-201ENST00000429959 156 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 RPL36AP33-201ENST00000450395 310 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 RPL23AP11-201ENST00000475260 469 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC092593.2-201ENST00000513866 913 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC104986.1-201ENST00000517978 436 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 AP001207.1-201ENST00000524051 481 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC090616.5-202ENST00000582111 297 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC015871.2-201ENST00000603605 948 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC069234.5-201ENST00000611056 416 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC015967.1-201ENST00000619893 476 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 AC073348.1-201ENST00000623002 331 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC42Q96M95 MIR4496-201ENST00000635896 61 ntBASIC3.13□□□□□ -1.91
CCDC42Q96M95 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC42Q96M95 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms