Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS39Q96JC1 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC130650.2-201ENST00000618736 2403 ntBASIC3.65□□□□□ -1.82
VPS39Q96JC1 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.65□□□□□ -1.82
VPS39Q96JC1 MFSD8-236ENST00000641509 4050 ntBASIC3.65□□□□□ -1.82
VPS39Q96JC1 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 RNA5SP42-201ENST00000364278 115 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AP002784.2-201ENST00000397300 549 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 AL591034.1-201ENST00000407447 340 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 SNORA57.3-201ENST00000411095 141 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 RN7SKP263-201ENST00000411194 309 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC246680.2-201ENST00000422106 389 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 RPL7P59-201ENST00000447700 943 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 CDC42P1-201ENST00000456658 548 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AL136126.1-201ENST00000473603 402 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC010301.1-201ENST00000473936 355 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS39Q96JC1 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS39Q96JC1 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS39Q96JC1 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC019227.1-201ENST00000526902 510 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC023161.2-201ENST00000551218 780 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 NIFKP8-201ENST00000560500 874 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AP001029.3-201ENST00000588063 596 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 MIR6875-201ENST00000617506 72 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 AL354798.1-201ENST00000622505 329 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC068880.4-201ENST00000623082 495 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 AL732618.1-201ENST00000623251 301 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 AC068724.3-201ENST00000625906 87 ntBASIC3.65□□□□□ -1.83
VPS39Q96JC1 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.83
VPS39Q96JC1 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS39Q96JC1 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 RNU6-354P-201ENST00000383862 107 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 RNU6-610P-201ENST00000384264 107 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 RPL30P2-201ENST00000414021 291 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 AL139247.1-201ENST00000422768 325 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 RPS6P14-201ENST00000425165 719 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 AL035410.1-201ENST00000427409 427 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 HIGD1AP11-201ENST00000438361 280 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 TRBV26-201ENST00000456572 344 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 VN1R105P-201ENST00000486595 910 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 AC011352.3-201ENST00000505162 593 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 MTCYBP37-201ENST00000510642 1133 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 MTCO3P27-201ENST00000514397 196 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 AC112206.4-201ENST00000515142 405 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 RN7SKP21-201ENST00000516503 220 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 TMF1P1-201ENST00000576058 373 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 MIR3160-1-201ENST00000577972 85 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 AC133794.1-201ENST00000602731 914 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS39Q96JC1 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS39Q96JC1 AL590240.3-201ENST00000621416 943 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 AP002371.2-201ENST00000624450 503 ntBASIC3.64□□□□□ -1.83
VPS39Q96JC1 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
VPS39Q96JC1 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS39Q96JC1 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC244517.1-201ENST00000606030 2086 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS39Q96JC1 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS39Q96JC1 RNU6-619P-201ENST00000365146 108 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 MIR30B-201ENST00000384850 88 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 AL023807.1-201ENST00000407932 359 ntBASIC3.63□□□□□ -1.83
VPS39Q96JC1 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS39Q96JC1 AC009237.5-201ENST00000414271 501 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms