Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC1.66□□□□□ -2.14
HSPG2P98160 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.66□□□□□ -2.14
HSPG2P98160 AC007423.1-201ENST00000605009 627 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AL136981.2-201ENST00000617319 734 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC1.66□□□□□ -2.14
HSPG2P98160 SPATA2P1-201ENST00000431223 2055 ntBASIC1.65□□□□□ -2.14
HSPG2P98160 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
HSPG2P98160 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC1.65□□□□□ -2.14
HSPG2P98160 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
HSPG2P98160 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.14
HSPG2P98160 RPL29P29-201ENST00000448725 423 ntBASIC1.65□□□□□ -2.14
HSPG2P98160 AC090543.2-201ENST00000483963 348 ntBASIC1.65□□□□□ -2.14
HSPG2P98160 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC1.65□□□□□ -2.14
HSPG2P98160 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
HSPG2P98160 AC108471.1-201ENST00000513977 287 ntBASIC1.65□□□□□ -2.14
HSPG2P98160 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC1.65□□□□□ -2.14
HSPG2P98160 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.65□□□□□ -2.14
HSPG2P98160 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC1.65□□□□□ -2.14
HSPG2P98160 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
HSPG2P98160 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
HSPG2P98160 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
HSPG2P98160 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.65□□□□□ -2.15
HSPG2P98160 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC1.65□□□□□ -2.15
HSPG2P98160 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
HSPG2P98160 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC1.65□□□□□ -2.15
HSPG2P98160 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
HSPG2P98160 AL356292.1-201ENST00000283110 373 ntBASIC1.65□□□□□ -2.15
HSPG2P98160 SNORD56.3-201ENST00000363507 71 ntBASIC1.65□□□□□ -2.15
HSPG2P98160 RPS12P2-201ENST00000439728 269 ntBASIC1.65□□□□□ -2.15
HSPG2P98160 CYCSP20-201ENST00000473154 315 ntBASIC1.65□□□□□ -2.15
HSPG2P98160 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC1.65□□□□□ -2.15
HSPG2P98160 AC055855.1-201ENST00000489563 579 ntBASIC1.65□□□□□ -2.15
HSPG2P98160 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC1.65□□□□□ -2.15
HSPG2P98160 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC1.65□□□□□ -2.15
HSPG2P98160 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC1.65□□□□□ -2.15
HSPG2P98160 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC1.65□□□□□ -2.15
HSPG2P98160 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC1.65□□□□□ -2.15
HSPG2P98160 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC1.65□□□□□ -2.15
HSPG2P98160 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.15
HSPG2P98160 SNORA25.9-201ENST00000365087 128 ntBASIC1.65□□□□□ -2.15
HSPG2P98160 ISCA1P2-201ENST00000438679 421 ntBASIC1.65□□□□□ -2.15
HSPG2P98160 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC1.65□□□□□ -2.15
HSPG2P98160 SRIP1-201ENST00000489235 288 ntBASIC1.65□□□□□ -2.15
HSPG2P98160 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC1.65□□□□□ -2.15
HSPG2P98160 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC1.65□□□□□ -2.15
HSPG2P98160 AC108729.3-201ENST00000513484 108 ntBASIC1.65□□□□□ -2.15
HSPG2P98160 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC1.65□□□□□ -2.15
HSPG2P98160 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
HSPG2P98160 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC1.64□□□□□ -2.15
HSPG2P98160 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
HSPG2P98160 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.64□□□□□ -2.15
HSPG2P98160 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC1.64□□□□□ -2.15
HSPG2P98160 RPS12P23-201ENST00000419579 400 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC1.64□□□□□ -2.15
HSPG2P98160 AC092013.1-201ENST00000438795 332 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 RNU6-1053P-201ENST00000515930 101 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 RNU6-295P-201ENST00000516901 104 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 OR5AK3P-201ENST00000527486 1297 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
HSPG2P98160 AL049555.1-201ENST00000562834 1933 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 AC093278.1-201ENST00000494700 600 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.64□□□□□ -2.15
HSPG2P98160 AC023043.2-201ENST00000589678 1026 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 AC093673.2-201ENST00000609674 331 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 AC025034.2-201ENST00000623264 286 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 AC090897.3-201ENST00000636973 1157 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 AC104454.1-201ENST00000421341 1401 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC1.64□□□□□ -2.15
HSPG2P98160 ADAM3A-203ENST00000461344 2157 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
HSPG2P98160 RPL31P45-201ENST00000419532 356 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC1.64□□□□□ -2.15
HSPG2P98160 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC1.64□□□□□ -2.15
HSPG2P98160 AC091917.2-201ENST00000505002 744 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 RFESD-208ENST00000513950 464 ntTSL 5 BASIC1.64□□□□□ -2.15
HSPG2P98160 AC007424.1-203ENST00000554613 687 ntBASIC1.64□□□□□ -2.15
HSPG2P98160 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC1.64□□□□□ -2.15
HSPG2P98160 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC1.64□□□□□ -2.15
HSPG2P98160 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC1.64□□□□□ -2.15
HSPG2P98160 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
HSPG2P98160 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
HSPG2P98160 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
HSPG2P98160 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC1.64□□□□□ -2.15
HSPG2P98160 MIR423-201ENST00000362201 94 ntBASIC1.63□□□□□ -2.15
HSPG2P98160 RNA5SP425-201ENST00000410336 112 ntBASIC1.63□□□□□ -2.15
HSPG2P98160 OR6C64P-201ENST00000419708 825 ntBASIC1.63□□□□□ -2.15
HSPG2P98160 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
HSPG2P98160 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC1.63□□□□□ -2.15
HSPG2P98160 SNORA31.1-201ENST00000515993 133 ntBASIC1.63□□□□□ -2.15
HSPG2P98160 SNORA31.5-201ENST00000516190 133 ntBASIC1.63□□□□□ -2.15
HSPG2P98160 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC1.63□□□□□ -2.15
HSPG2P98160 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC1.63□□□□□ -2.15
HSPG2P98160 IGKV1OR2-6-201ENST00000603485 277 ntBASIC1.63□□□□□ -2.15
HSPG2P98160 SNORA35B-201ENST00000607417 129 ntBASIC1.63□□□□□ -2.15
HSPG2P98160 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
HSPG2P98160 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC1.63□□□□□ -2.15
HSPG2P98160 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC1.63□□□□□ -2.15
HSPG2P98160 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC1.63□□□□□ -2.15
HSPG2P98160 AC009263.1-201ENST00000441193 1239 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms