Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TUSC7.1-201ENST00000610969 165 ntBASIC3.62□□□□□ -1.83
SOX3P41225 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.62□□□□□ -1.83
SOX3P41225 AL591424.2-201ENST00000617023 128 ntBASIC3.62□□□□□ -1.83
SOX3P41225 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SOX3P41225 AC073530.2-201ENST00000623987 261 ntBASIC3.62□□□□□ -1.83
SOX3P41225 AC097655.1-201ENST00000635075 318 ntBASIC3.62□□□□□ -1.83
SOX3P41225 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
SOX3P41225 MIR4278-201ENST00000636094 69 ntBASIC3.62□□□□□ -1.83
SOX3P41225 MIR1322-201ENST00000638013 71 ntBASIC3.62□□□□□ -1.83
SOX3P41225 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
SOX3P41225 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.62□□□□□ -1.83
SOX3P41225 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SOX3P41225 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SOX3P41225 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.62□□□□□ -1.83
SOX3P41225 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.62□□□□□ -1.83
SOX3P41225 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SOX3P41225 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 HSPA8P1-201ENST00000425843 1833 ntBASIC3.61□□□□□ -1.83
SOX3P41225 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SOX3P41225 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SOX3P41225 FAM133CP-201ENST00000332869 704 ntBASIC3.61□□□□□ -1.83
SOX3P41225 RNU5D-1-201ENST00000363299 116 ntBASIC3.61□□□□□ -1.83
SOX3P41225 RN7SKP202-201ENST00000410439 330 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AMD1P2-201ENST00000412936 992 ntBASIC3.61□□□□□ -1.83
SOX3P41225 RPS3AP9-201ENST00000417027 792 ntBASIC3.61□□□□□ -1.83
SOX3P41225 MTND2P16-201ENST00000419987 799 ntBASIC3.61□□□□□ -1.83
SOX3P41225 MTCO3P1-205ENST00000422088 832 ntBASIC3.61□□□□□ -1.83
SOX3P41225 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 RWDD4P2-201ENST00000426392 563 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 KCTD9P3-201ENST00000434597 1169 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 MTCYBP31-201ENST00000438855 1122 ntBASIC3.61□□□□□ -1.83
SOX3P41225 MTND1P26-201ENST00000440488 538 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.61□□□□□ -1.83
SOX3P41225 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 RPS20P21-201ENST00000466859 343 ntBASIC3.61□□□□□ -1.83
SOX3P41225 RN7SL323P-201ENST00000494712 295 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AL139099.1-201ENST00000497398 403 ntBASIC3.61□□□□□ -1.83
SOX3P41225 SNX5P1-201ENST00000505757 1041 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.61□□□□□ -1.83
SOX3P41225 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.61□□□□□ -1.83
SOX3P41225 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 RNU6-352P-201ENST00000516908 107 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC087369.1-201ENST00000520775 996 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.61□□□□□ -1.83
SOX3P41225 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.61□□□□□ -1.83
SOX3P41225 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.61□□□□□ -1.83
SOX3P41225 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.61□□□□□ -1.83
SOX3P41225 AC087465.1-201ENST00000560574 245 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.61□□□□□ -1.83
SOX3P41225 AC138915.2-201ENST00000569776 97 ntBASIC3.61□□□□□ -1.83
SOX3P41225 HNRNPCP4-201ENST00000571636 900 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC099489.2-201ENST00000574976 260 ntBASIC3.61□□□□□ -1.83
SOX3P41225 SNORD39.3-201ENST00000584451 71 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC107982.3-201ENST00000584957 985 ntBASIC3.61□□□□□ -1.83
SOX3P41225 NIFKP6-201ENST00000598115 845 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC231759.1-201ENST00000616455 597 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AC004825.2-201ENST00000616634 455 ntBASIC3.61□□□□□ -1.83
SOX3P41225 FP236240.3-201ENST00000623061 327 ntBASIC3.61□□□□□ -1.83
SOX3P41225 AL133412.1-201ENST00000380194 2992 ntBASIC3.61□□□□□ -1.83
SOX3P41225 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SOX3P41225 AC117529.2-201ENST00000512159 2068 ntBASIC3.61□□□□□ -1.83
SOX3P41225 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.6□□□□□ -1.83
SOX3P41225 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX3P41225 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
SOX3P41225 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX3P41225 AL592437.2-201ENST00000421655 2434 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC011978.2-201ENST00000569835 2054 ntBASIC3.6□□□□□ -1.83
SOX3P41225 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SOX3P41225 AP000776.1-201ENST00000530032 1663 ntBASIC3.6□□□□□ -1.83
SOX3P41225 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
SOX3P41225 RNU6-157P-201ENST00000383957 107 ntBASIC3.6□□□□□ -1.83
SOX3P41225 RNU6-921P-201ENST00000384361 107 ntBASIC3.6□□□□□ -1.83
SOX3P41225 MIR30B-201ENST00000384850 88 ntBASIC3.6□□□□□ -1.83
SOX3P41225 ATP5F1P4-201ENST00000397288 746 ntBASIC3.6□□□□□ -1.83
SOX3P41225 SNORA11-201ENST00000408789 128 ntBASIC3.6□□□□□ -1.83
SOX3P41225 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.6□□□□□ -1.83
SOX3P41225 AC107081.1-201ENST00000414975 361 ntBASIC3.6□□□□□ -1.83
SOX3P41225 NUP35P2-201ENST00000416748 943 ntBASIC3.6□□□□□ -1.83
SOX3P41225 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.6□□□□□ -1.83
SOX3P41225 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX3P41225 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.6□□□□□ -1.83
SOX3P41225 AL050321.1-201ENST00000432363 400 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC083863.1-201ENST00000438811 231 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.6□□□□□ -1.83
SOX3P41225 RPL21P11-201ENST00000461458 483 ntBASIC3.6□□□□□ -1.83
SOX3P41225 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.6□□□□□ -1.83
SOX3P41225 AC004263.1-201ENST00000479327 332 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC004069.2-201ENST00000505438 1114 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AC109445.1-201ENST00000512356 383 ntBASIC3.6□□□□□ -1.83
SOX3P41225 MTCO1P30-201ENST00000515244 580 ntBASIC3.6□□□□□ -1.83
SOX3P41225 RNU1-45P-201ENST00000517191 141 ntBASIC3.6□□□□□ -1.83
SOX3P41225 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX3P41225 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.6□□□□□ -1.83
SOX3P41225 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.6□□□□□ -1.83
SOX3P41225 MTATP6P15-201ENST00000527233 835 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms