Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HIGD1AP8-201ENST00000453927 274 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 AL445433.1-201ENST00000457507 257 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AP000942.1-201ENST00000463969 747 ntBASIC4.75□□□□□ -1.65
MSX2P35548 RN7SL443P-201ENST00000464331 290 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 RN7SL799P-201ENST00000475891 298 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AC020890.1-201ENST00000491837 504 ntBASIC4.75□□□□□ -1.65
MSX2P35548 RN7SL441P-201ENST00000492388 296 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 HMGN1P13-201ENST00000505795 138 ntBASIC4.75□□□□□ -1.65
MSX2P35548 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX2P35548 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX2P35548 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 AC007424.1-203ENST00000554613 687 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 SULT1C2P1-202ENST00000562418 459 ntBASIC4.75□□□□□ -1.65
MSX2P35548 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX2P35548 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 AC027243.2-201ENST00000602530 724 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AL050343.2-201ENST00000607338 280 ntBASIC4.75□□□□□ -1.65
MSX2P35548 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 AC090574.1-201ENST00000623186 233 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AP006248.2-201ENST00000623309 592 ntBASIC4.75□□□□□ -1.65
MSX2P35548 CYP4F35P-202ENST00000636121 390 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX2P35548 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 AC083843.3-201ENST00000623679 2186 ntBASIC4.75□□□□□ -1.65
MSX2P35548 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX2P35548 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX2P35548 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSX2P35548 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
MSX2P35548 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
MSX2P35548 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSX2P35548 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSX2P35548 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
MSX2P35548 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSX2P35548 AC009643.2-201ENST00000603543 1448 ntBASIC4.74□□□□□ -1.65
MSX2P35548 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSX2P35548 CCT4P2-201ENST00000233836 1548 ntBASIC4.74□□□□□ -1.65
MSX2P35548 RNU4-79P-201ENST00000362764 141 ntBASIC4.74□□□□□ -1.65
MSX2P35548 SNORA63-201ENST00000363450 132 ntBASIC4.74□□□□□ -1.65
MSX2P35548 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSX2P35548 RNU6-1227P-201ENST00000383981 107 ntBASIC4.74□□□□□ -1.65
MSX2P35548 RNA5SP284-201ENST00000384547 118 ntBASIC4.74□□□□□ -1.65
MSX2P35548 RNU1-77P-201ENST00000390868 162 ntBASIC4.74□□□□□ -1.65
MSX2P35548 BMS1P17-202ENST00000416720 316 ntBASIC4.74□□□□□ -1.65
MSX2P35548 RPL34P3-201ENST00000421454 338 ntBASIC4.74□□□□□ -1.65
MSX2P35548 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.74□□□□□ -1.65
MSX2P35548 AC010881.1-201ENST00000433830 235 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AL161636.2-201ENST00000445179 927 ntBASIC4.74□□□□□ -1.65
MSX2P35548 HMGN1P36-201ENST00000446623 298 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX2P35548 PTMAP3-201ENST00000447474 330 ntBASIC4.74□□□□□ -1.65
MSX2P35548 EIF4A1P6-201ENST00000448133 1210 ntBASIC4.74□□□□□ -1.65
MSX2P35548 MTND1P18-201ENST00000448191 573 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.74□□□□□ -1.65
MSX2P35548 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX2P35548 AC011225.1-201ENST00000457751 369 ntBASIC4.74□□□□□ -1.65
MSX2P35548 CYCSP34-201ENST00000458172 304 ntBASIC4.74□□□□□ -1.65
MSX2P35548 RPS20P20-201ENST00000460498 340 ntBASIC4.74□□□□□ -1.65
MSX2P35548 RPS17P2-201ENST00000461663 408 ntBASIC4.74□□□□□ -1.65
MSX2P35548 RPS15AP17-201ENST00000470598 390 ntBASIC4.74□□□□□ -1.65
MSX2P35548 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
MSX2P35548 RPL36AP51-201ENST00000487216 318 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AC139783.2-201ENST00000504847 1145 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX2P35548 AC010486.1-201ENST00000511793 424 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX2P35548 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.74□□□□□ -1.65
MSX2P35548 OR4A12P-201ENST00000530847 918 ntBASIC4.74□□□□□ -1.65
MSX2P35548 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX2P35548 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSX2P35548 AC079600.1-201ENST00000550326 297 ntBASIC4.74□□□□□ -1.65
MSX2P35548 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX2P35548 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX2P35548 AC017100.2-201ENST00000584628 355 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AC010928.3-201ENST00000587712 541 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AP001836.1-201ENST00000604675 523 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AL136363.1-201ENST00000605349 337 ntBASIC4.74□□□□□ -1.65
MSX2P35548 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 MIR6768-201ENST00000610734 72 ntBASIC4.74□□□□□ -1.65
MSX2P35548 RPSAP73-201ENST00000614820 330 ntBASIC4.74□□□□□ -1.65
MSX2P35548 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.74□□□□□ -1.65
MSX2P35548 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX2P35548 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX2P35548 AL031119.1-201ENST00000404707 1879 ntBASIC4.74□□□□□ -1.65
MSX2P35548 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms