Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA9P31269 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA9P31269 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA9P31269 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA9P31269 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA9P31269 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA9P31269 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA9P31269 AC010385.1-201ENST00000412374 256 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AC126124.2-201ENST00000413542 321 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA9P31269 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA9P31269 AC007000.2-201ENST00000442564 487 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA9P31269 AC023512.1-201ENST00000444513 499 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXA9P31269 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXA9P31269 NANOGNBP1-201ENST00000448444 480 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA9P31269 HMGB3P8-201ENST00000449709 577 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXA9P31269 ELOCP23-201ENST00000452014 332 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 FCF1P3-201ENST00000496394 590 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AC097462.2-201ENST00000504623 481 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AC025768.1-201ENST00000510057 267 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXA9P31269 AC093755.1-201ENST00000512950 1023 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA9P31269 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXA9P31269 AC004923.2-201ENST00000529649 369 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA9P31269 AP002404.1-201ENST00000532005 451 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA9P31269 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA9P31269 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXA9P31269 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXA9P31269 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA9P31269 AC010735.1-201ENST00000567305 1026 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA9P31269 LARP7P3-201ENST00000579888 337 ntBASIC3.43□□□□□ -1.86
HOXA9P31269 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.43□□□□□ -1.86
HOXA9P31269 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA9P31269 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HOXA9P31269 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
HOXA9P31269 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA9P31269 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA9P31269 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HOXA9P31269 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA9P31269 EI24P2-201ENST00000397776 1076 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 AL136116.1-201ENST00000403591 381 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 RN7SKP285-201ENST00000410137 318 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA9P31269 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXA9P31269 MTND2P16-201ENST00000419987 799 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 RPL17P35-201ENST00000432217 549 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 RPL21P112-201ENST00000434403 463 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 AL513321.1-201ENST00000441175 761 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 ARL5AP2-201ENST00000444698 533 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 RPL29P29-201ENST00000448725 423 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 MTND2P30-201ENST00000456663 382 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 RPS4XP13-201ENST00000483219 789 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 RPL31P13-201ENST00000484151 370 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 AC107398.1-201ENST00000486904 505 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 AC108120.2-201ENST00000512973 294 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA9P31269 AC107934.2-201ENST00000518653 310 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 NDUFB9P3-201ENST00000521269 501 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 AL139174.1-201ENST00000531489 886 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXA9P31269 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA9P31269 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA9P31269 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA9P31269 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA9P31269 PCNAP1-202ENST00000595299 752 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 AL451007.1-201ENST00000595491 289 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA9P31269 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA9P31269 AC092326.2-201ENST00000624772 1561 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA9P31269 AC005183.1-201ENST00000603687 1979 ntBASIC3.42□□□□□ -1.86
HOXA9P31269 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA9P31269 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA9P31269 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA9P31269 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA9P31269 SNORA7.4-201ENST00000384249 137 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 Y_RNA.510-201ENST00000384511 114 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 MIR607-201ENST00000385241 96 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXA9P31269 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXA9P31269 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA9P31269 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA9P31269 AC073508.1-201ENST00000428866 656 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA9P31269 HMGB1P12-201ENST00000438594 598 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 AL831737.1-201ENST00000441288 271 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA9P31269 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA9P31269 AC087312.1-201ENST00000471411 480 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 NCOR1P1-202ENST00000486162 291 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms