Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.35□□□□□ -1.71
BDNFP23560 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
BDNFP23560 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
BDNFP23560 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
BDNFP23560 AC090740.1-201ENST00000623193 2262 ntBASIC4.34□□□□□ -1.71
BDNFP23560 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
BDNFP23560 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
BDNFP23560 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
BDNFP23560 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
BDNFP23560 Y_RNA.126-201ENST00000363382 111 ntBASIC4.34□□□□□ -1.71
BDNFP23560 PPIAP31-201ENST00000405422 495 ntBASIC4.34□□□□□ -1.71
BDNFP23560 HSPE1P12-201ENST00000412576 301 ntBASIC4.34□□□□□ -1.71
BDNFP23560 MTATP6P27-201ENST00000416987 621 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
BDNFP23560 USP9YP31-201ENST00000431405 881 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.34□□□□□ -1.71
BDNFP23560 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.34□□□□□ -1.71
BDNFP23560 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
BDNFP23560 RPS4XP4-201ENST00000443195 763 ntBASIC4.34□□□□□ -1.71
BDNFP23560 MTCO2P25-201ENST00000447065 681 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.34□□□□□ -1.71
BDNFP23560 AC112492.1-201ENST00000449607 712 ntBASIC4.34□□□□□ -1.71
BDNFP23560 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
BDNFP23560 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.34□□□□□ -1.71
BDNFP23560 RPL7P9-201ENST00000468715 747 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC017015.1-201ENST00000477387 286 ntBASIC4.34□□□□□ -1.71
BDNFP23560 RPL23AP44-201ENST00000482216 473 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC110792.1-201ENST00000491826 472 ntBASIC4.34□□□□□ -1.71
BDNFP23560 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.34□□□□□ -1.71
BDNFP23560 ARL2BPP6-201ENST00000512757 439 ntBASIC4.34□□□□□ -1.71
BDNFP23560 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.34□□□□□ -1.71
BDNFP23560 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.34□□□□□ -1.71
BDNFP23560 AL163153.1-201ENST00000554223 283 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.34□□□□□ -1.71
BDNFP23560 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.34□□□□□ -1.71
BDNFP23560 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
BDNFP23560 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.34□□□□□ -1.71
BDNFP23560 AC064801.1-201ENST00000612025 407 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AL110115.1-201ENST00000614396 364 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC023158.2-201ENST00000614876 543 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC090246.1-201ENST00000616499 426 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC073348.1-201ENST00000623002 331 ntBASIC4.34□□□□□ -1.71
BDNFP23560 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.34□□□□□ -1.71
BDNFP23560 OR4G11P-202ENST00000642116 1414 ntBASIC4.34□□□□□ -1.71
BDNFP23560 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.34□□□□□ -1.71
BDNFP23560 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
BDNFP23560 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
BDNFP23560 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
BDNFP23560 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.33□□□□□ -1.72
BDNFP23560 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
BDNFP23560 AP001486.2-201ENST00000561652 5113 ntBASIC4.33□□□□□ -1.72
BDNFP23560 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.33□□□□□ -1.72
BDNFP23560 SNRPEP3-201ENST00000338402 276 ntBASIC4.33□□□□□ -1.72
BDNFP23560 RNU5E-10P-201ENST00000363506 118 ntBASIC4.33□□□□□ -1.72
BDNFP23560 AMD1P2-201ENST00000412936 992 ntBASIC4.33□□□□□ -1.72
BDNFP23560 AC245052.5-201ENST00000416320 649 ntBASIC4.33□□□□□ -1.72
BDNFP23560 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.33□□□□□ -1.72
BDNFP23560 RPL17P36-201ENST00000420302 549 ntBASIC4.33□□□□□ -1.72
BDNFP23560 OR5BE1P-201ENST00000425977 939 ntBASIC4.33□□□□□ -1.72
BDNFP23560 AL358472.1-201ENST00000431295 329 ntBASIC4.33□□□□□ -1.72
BDNFP23560 MTND2P5-201ENST00000432656 1006 ntBASIC4.33□□□□□ -1.72
BDNFP23560 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
BDNFP23560 TPTE2P3-201ENST00000441562 1189 ntBASIC4.33□□□□□ -1.72
BDNFP23560 RPL21P89-201ENST00000444021 467 ntBASIC4.33□□□□□ -1.72
BDNFP23560 Z82190.1-201ENST00000454534 490 ntBASIC4.33□□□□□ -1.72
BDNFP23560 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC4.33□□□□□ -1.72
BDNFP23560 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.33□□□□□ -1.72
BDNFP23560 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.33□□□□□ -1.72
BDNFP23560 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.33□□□□□ -1.72
BDNFP23560 SLC2A13P1-201ENST00000531560 322 ntBASIC4.33□□□□□ -1.72
BDNFP23560 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.33□□□□□ -1.72
BDNFP23560 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC4.33□□□□□ -1.72
BDNFP23560 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.33□□□□□ -1.72
BDNFP23560 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
BDNFP23560 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.33□□□□□ -1.72
BDNFP23560 BNIP3P5-201ENST00000562290 498 ntBASIC4.33□□□□□ -1.72
BDNFP23560 AL133457.1-201ENST00000564251 987 ntBASIC4.33□□□□□ -1.72
BDNFP23560 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.33□□□□□ -1.72
BDNFP23560 MTND6P33-201ENST00000571794 183 ntBASIC4.33□□□□□ -1.72
BDNFP23560 MIR5684-201ENST00000585074 65 ntBASIC4.33□□□□□ -1.72
BDNFP23560 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.33□□□□□ -1.72
BDNFP23560 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC4.33□□□□□ -1.72
BDNFP23560 AC022509.4-201ENST00000621404 572 ntBASIC4.33□□□□□ -1.72
BDNFP23560 AC004009.2-201ENST00000623016 728 ntBASIC4.33□□□□□ -1.72
BDNFP23560 OR5BE1P-202ENST00000641168 1176 ntBASIC4.33□□□□□ -1.72
BDNFP23560 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
BDNFP23560 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
BDNFP23560 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.33□□□□□ -1.72
BDNFP23560 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
BDNFP23560 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
BDNFP23560 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.33□□□□□ -1.72
BDNFP23560 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
BDNFP23560 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.33□□□□□ -1.72
BDNFP23560 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
BDNFP23560 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
BDNFP23560 AC027290.2-201ENST00000623210 18662 ntBASIC4.32□□□□□ -1.72
BDNFP23560 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms