Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A3P12111 RNY1P14-201ENST00000384426 108 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC2.75□□□□□ -1.97
COL6A3P12111 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.75□□□□□ -1.97
COL6A3P12111 MFSD8-245ENST00000641743 948 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 AC005005.4-201ENST00000623789 16698 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A3P12111 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.75□□□□□ -1.97
COL6A3P12111 AC092593.1-201ENST00000515413 1815 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A3P12111 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A3P12111 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.75□□□□□ -1.97
COL6A3P12111 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC2.75□□□□□ -1.97
COL6A3P12111 RANP4-201ENST00000413361 655 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 FCF1P1-201ENST00000432690 571 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 AC108471.1-201ENST00000513977 287 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.75□□□□□ -1.97
COL6A3P12111 MTCYBP28-201ENST00000566728 1132 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 AC073476.4-201ENST00000628409 72 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A3P12111 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC2.75□□□□□ -1.97
COL6A3P12111 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A3P12111 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A3P12111 AC017007.4-201ENST00000503353 1352 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.75□□□□□ -1.97
COL6A3P12111 AC007064.1-201ENST00000412238 351 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 AC004801.2-202ENST00000463559 283 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 AC022882.1-201ENST00000532142 501 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 AC006272.2-201ENST00000594725 163 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.75□□□□□ -1.97
COL6A3P12111 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.75□□□□□ -1.97
COL6A3P12111 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A3P12111 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A3P12111 AP006437.1-201ENST00000641440 3685 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 DDX18P3-201ENST00000404856 2007 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL6A3P12111 AL024474.1-201ENST00000404655 591 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 SPA17P1-201ENST00000416656 452 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.74□□□□□ -1.97
COL6A3P12111 AC007395.1-201ENST00000451333 677 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL6A3P12111 SETP1-201ENST00000556014 845 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.74□□□□□ -1.97
COL6A3P12111 AL583832.1-201ENST00000603227 784 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 AC007423.1-201ENST00000605009 627 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 AC128687.1-201ENST00000605304 619 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.74□□□□□ -1.97
COL6A3P12111 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL6A3P12111 RPL12P26-201ENST00000452430 487 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 FAM92A1P2-202ENST00000504766 877 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.74□□□□□ -1.97
COL6A3P12111 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL6A3P12111 AC010620.2-201ENST00000600135 313 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC2.74□□□□□ -1.97
COL6A3P12111 MIR6845-201ENST00000613182 61 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.74□□□□□ -1.97
COL6A3P12111 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
COL6A3P12111 AC096644.4-201ENST00000563417 2912 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 AC012020.1-201ENST00000624541 1728 ntBASIC2.74□□□□□ -1.97
COL6A3P12111 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
COL6A3P12111 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.73□□□□□ -1.97
COL6A3P12111 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC2.73□□□□□ -1.97
COL6A3P12111 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 AL354710.1-201ENST00000453641 246 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 OR6K1P-201ENST00000456766 971 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 BTF3L4P4-201ENST00000506381 449 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.73□□□□□ -1.97
COL6A3P12111 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC2.73□□□□□ -1.97
COL6A3P12111 AC126118.1-201ENST00000607744 628 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 AL359715.5-201ENST00000623431 443 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
COL6A3P12111 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.73□□□□□ -1.97
COL6A3P12111 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.73□□□□□ -1.97
COL6A3P12111 AC093392.2-201ENST00000450682 337 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.73□□□□□ -1.97
COL6A3P12111 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC2.73□□□□□ -1.97
COL6A3P12111 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 NCAPGP1-201ENST00000505112 1814 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
COL6A3P12111 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC2.73□□□□□ -1.97
COL6A3P12111 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.73□□□□□ -1.97
COL6A3P12111 RNA5SP88-201ENST00000365560 109 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 RNU1-73P-201ENST00000383971 164 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.73□□□□□ -1.97
COL6A3P12111 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC2.73□□□□□ -1.97
COL6A3P12111 AL022099.1-201ENST00000604551 712 ntBASIC2.73□□□□□ -1.97
COL6A3P12111 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A3P12111 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC2.72□□□□□ -1.97
COL6A3P12111 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms