Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC4P09017 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXC4P09017 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC099489.2-201ENST00000574976 260 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 MIR4738-201ENST00000579134 87 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 MIR4276-201ENST00000584832 70 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC4P09017 CKS1BP3-201ENST00000600888 237 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AC079610.2-201ENST00000604818 690 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AC011374.2-201ENST00000607135 526 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AC112503.2-201ENST00000609005 552 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AL442067.2-201ENST00000614033 363 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC4P09017 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC091046.2-201ENST00000620775 665 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC008993.2-201ENST00000631744 806 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AC006927.4-201ENST00000639187 543 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 DCAF13P1-201ENST00000495256 1330 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 CR383658.2-201ENST00000547576 1525 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC4P09017 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC4P09017 ZNF90P1-201ENST00000480493 1951 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC4P09017 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.32□□□□□ -1.88
HOXC4P09017 AP001148.1-201ENST00000624124 2359 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
HOXC4P09017 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC058791.1-201ENST00000608412 3198 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC4P09017 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HOXC4P09017 OR52E6-202ENST00000379946 954 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 AC007390.1-201ENST00000415722 356 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC4P09017 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC008264.1-201ENST00000447612 367 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXC4P09017 BTF3P5-201ENST00000457252 467 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC010468.1-201ENST00000461022 817 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXC4P09017 APOOP4-201ENST00000513530 597 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC104115.2-201ENST00000523026 687 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 C1DP5-201ENST00000525775 383 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 OSBPL9P3-201ENST00000534523 595 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC074029.1-201ENST00000552531 1044 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXC4P09017 MTATP6P2-201ENST00000603319 678 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
HOXC4P09017 AL161756.2-201ENST00000604597 246 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 AC018618.2-201ENST00000604770 446 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 AC073657.2-201ENST00000605661 303 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 AC063944.3-201ENST00000609969 533 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC068880.4-201ENST00000623082 495 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC4P09017 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC4P09017 AC004808.1-201ENST00000627671 721 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC4P09017 AL645568.2-201ENST00000432815 1337 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 ZNF542P-204ENST00000482727 1305 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 AC092326.2-201ENST00000624772 1561 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC4P09017 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC4P09017 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC4P09017 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
HOXC4P09017 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.32□□□□□ -1.88
HOXC4P09017 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
HOXC4P09017 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC4P09017 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC4P09017 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXC4P09017 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.31□□□□□ -1.88
HOXC4P09017 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
HOXC4P09017 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXC4P09017 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXC4P09017 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXC4P09017 RNU6-356P-201ENST00000384140 107 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 RNU6-761P-201ENST00000384148 107 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 SNORA70E-201ENST00000384492 135 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 RNU6-1000P-201ENST00000391066 106 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 RN7SKP285-201ENST00000410137 318 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 RNU2-17P-201ENST00000410290 190 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 RNU4-47P-201ENST00000410876 114 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 BX323014.1-201ENST00000412876 237 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 Z99755.1-201ENST00000414048 380 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXC4P09017 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXC4P09017 MTATP6P17-201ENST00000431030 672 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXC4P09017 Z80107.1-201ENST00000436830 412 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 MTND1P26-201ENST00000440488 538 ntBASIC3.31□□□□□ -1.88
HOXC4P09017 ATP5C1P1-201ENST00000441945 895 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms