Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC2.48□□□□□ -2.01
SDCBPO00560 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
SDCBPO00560 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
SDCBPO00560 RNU6-386P-201ENST00000362650 107 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
SDCBPO00560 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
SDCBPO00560 MIR887-201ENST00000401258 79 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 SNORD88.1-201ENST00000408684 91 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AC008065.1-201ENST00000428525 348 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AL590103.1-201ENST00000434488 307 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.48□□□□□ -2.01
SDCBPO00560 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC2.48□□□□□ -2.01
SDCBPO00560 YWHAZP7-201ENST00000436906 631 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.48□□□□□ -2.01
SDCBPO00560 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC2.48□□□□□ -2.01
SDCBPO00560 TRIM60P18-201ENST00000441518 828 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AL592437.1-201ENST00000443781 492 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 RPL7P59-201ENST00000447700 943 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AL358232.1-201ENST00000448030 501 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC2.48□□□□□ -2.01
SDCBPO00560 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.48□□□□□ -2.01
SDCBPO00560 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC2.48□□□□□ -2.01
SDCBPO00560 RN7SL504P-201ENST00000494496 287 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC2.48□□□□□ -2.01
SDCBPO00560 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SDCBPO00560 RNU6-1004P-201ENST00000516584 111 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.48□□□□□ -2.01
SDCBPO00560 AP001207.1-201ENST00000524051 481 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AC007536.1-201ENST00000533382 349 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AC005412.1-201ENST00000580812 1049 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.48□□□□□ -2.01
SDCBPO00560 SRGNP1-201ENST00000603392 451 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AC018754.1-201ENST00000607486 925 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AL451074.6-201ENST00000608512 729 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AL159169.3-201ENST00000608871 561 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AC107871.2-201ENST00000612894 502 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 AC026422.1-201ENST00000623961 452 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 MIR6733-201ENST00000635723 61 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.48□□□□□ -2.01
SDCBPO00560 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.48□□□□□ -2.01
SDCBPO00560 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
SDCBPO00560 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.48□□□□□ -2.01
SDCBPO00560 MTND5P1-201ENST00000445440 1375 ntBASIC2.48□□□□□ -2.01
SDCBPO00560 ASNSP3-201ENST00000451989 1306 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
SDCBPO00560 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
SDCBPO00560 SNORA63.1-201ENST00000362493 131 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 RNU1-35P-201ENST00000362782 153 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 RNA5SP189-201ENST00000364920 115 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 RNU6-356P-201ENST00000384140 107 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 MIR23B-201ENST00000384832 97 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 RNA5SP129-201ENST00000410276 118 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC2.47□□□□□ -2.01
SDCBPO00560 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC2.47□□□□□ -2.01
SDCBPO00560 BTF3P9-201ENST00000418784 283 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 RPS24P8-201ENST00000431490 402 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC2.47□□□□□ -2.01
SDCBPO00560 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.47□□□□□ -2.01
SDCBPO00560 Z99127.2-201ENST00000441426 334 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 AL662791.1-201ENST00000441992 928 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC2.47□□□□□ -2.01
SDCBPO00560 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.47□□□□□ -2.01
SDCBPO00560 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC2.47□□□□□ -2.01
SDCBPO00560 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.47□□□□□ -2.01
SDCBPO00560 RPS3AP43-201ENST00000479743 781 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 AC068724.1-201ENST00000487100 792 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
SDCBPO00560 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
SDCBPO00560 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC2.47□□□□□ -2.01
SDCBPO00560 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.47□□□□□ -2.01
SDCBPO00560 AC034105.3-201ENST00000565294 442 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC2.47□□□□□ -2.01
SDCBPO00560 MIR5004-201ENST00000579078 107 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC2.47□□□□□ -2.01
SDCBPO00560 AC245128.3-201ENST00000594721 748 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 PCNAP1-202ENST00000595299 752 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.47□□□□□ -2.01
SDCBPO00560 AC016877.3-201ENST00000606778 504 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.47□□□□□ -2.01
SDCBPO00560 AC004832.5-201ENST00000608677 401 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 AC069200.1-201ENST00000609511 323 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 AC011472.4-201ENST00000615848 491 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 AC139713.2-210ENST00000641741 992 ntBASIC2.47□□□□□ -2.01
SDCBPO00560 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
SDCBPO00560 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.46□□□□□ -2.01
SDCBPO00560 AL355578.1-201ENST00000607405 1328 ntBASIC2.46□□□□□ -2.02
SDCBPO00560 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
SDCBPO00560 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
SDCBPO00560 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
SDCBPO00560 RNA5SP295-201ENST00000362655 121 ntBASIC2.46□□□□□ -2.02
SDCBPO00560 SNORA71.1-201ENST00000364523 117 ntBASIC2.46□□□□□ -2.02
SDCBPO00560 AL590004.2-201ENST00000404787 371 ntBASIC2.46□□□□□ -2.02
SDCBPO00560 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC2.46□□□□□ -2.02
SDCBPO00560 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
SDCBPO00560 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
SDCBPO00560 UBE2V1P1-201ENST00000430836 445 ntBASIC2.46□□□□□ -2.02
SDCBPO00560 HMGB1P45-201ENST00000435986 653 ntBASIC2.46□□□□□ -2.02
SDCBPO00560 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.46□□□□□ -2.02
SDCBPO00560 AL162389.1-201ENST00000449233 177 ntBASIC2.46□□□□□ -2.02
SDCBPO00560 RPL36AP33-201ENST00000450395 310 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms