Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 snoU109.1-201ENST00000459339 135 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC011276.1-201ENST00000469688 323 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 NIP7P2-201ENST00000485801 544 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 HMGB1P36-201ENST00000487709 576 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC083829.1-201ENST00000503756 657 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC016065.2-201ENST00000514530 444 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC022878.1-201ENST00000530684 149 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 NTS-203ENST00000551529 801 ntTSL 3 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 MIR4801-201ENST00000582704 82 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 BBIP1P1-201ENST00000602999 279 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 COX6CP4-201ENST00000605798 228 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC068944.2-201ENST00000610373 403 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC012409.3-201ENST00000611343 981 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 U6atac.1-201ENST00000616025 117 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC108479.2-201ENST00000617314 601 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC009237.17-201ENST00000618111 748 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC009704.2-201ENST00000618739 483 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC015908.5-201ENST00000623289 343 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 SMG1P4-204ENST00000523028 4131 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC025031.4-201ENST00000621248 3271 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AL122126.1-201ENST00000546905 1318 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 ERCC6-202ENST00000374127 1782 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 RNA5SP509-201ENST00000364577 119 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 SNORA68.2-201ENST00000391263 128 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 SDHCP2-201ENST00000398565 501 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 ARL4AP5-201ENST00000404372 599 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 U3.35-201ENST00000408405 208 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 HMGB3P23-201ENST00000414981 585 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 E2F6P2-201ENST00000420708 748 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AL356387.2-201ENST00000422272 243 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC104333.2-201ENST00000422630 192 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 RPL7AP25-201ENST00000423357 805 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC004938.1-201ENST00000438468 308 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 RPL7P36-201ENST00000444633 681 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC005297.2-201ENST00000450430 606 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 MTCO1P42-201ENST00000457379 726 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC103987.1-201ENST00000473394 348 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 RPL7P24-201ENST00000493052 752 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC023424.2-201ENST00000493479 777 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC087883.1-201ENST00000551882 391 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC136619.2-201ENST00000563361 631 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC011477.5-201ENST00000586571 259 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC103792.1-201ENST00000603591 919 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC109347.2-201ENST00000610220 349 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC091834.1-201ENST00000614543 472 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC008250.2-201ENST00000615261 205 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC009318.4-201ENST00000620496 486 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 AC125257.1-201ENST00000560400 2930 ntBASIC4.79□□□□□ -1.64
TDP1Q9NUW8 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
TDP1Q9NUW8 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
TDP1Q9NUW8 AC104260.2-201ENST00000623551 3497 ntBASIC4.78□□□□□ -1.64
TDP1Q9NUW8 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
TDP1Q9NUW8 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.78□□□□□ -1.64
TDP1Q9NUW8 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
TDP1Q9NUW8 MTND5P26-201ENST00000426018 1752 ntBASIC4.78□□□□□ -1.64
TDP1Q9NUW8 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 144.2 ms