Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 SERPINE4P-201ENST00000554978 281 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 PIGPP4-201ENST00000584447 307 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 MIR4999-201ENST00000585029 91 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 AC103881.1-201ENST00000603476 538 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 AL163642.2-201ENST00000604722 1019 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 AL591034.3-201ENST00000605511 685 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 AL354760.1-201ENST00000608357 643 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 AC005332.6-201ENST00000613178 446 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 AC091931.1-201ENST00000623488 728 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 AL118496.1-201ENST00000440201 1812 ntBASIC4.11□□□□□ -1.75
PCDH9Q9HC56 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.11□□□□□ -1.75
PCDH9Q9HC56 MTCO1P14-201ENST00000441695 1559 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 Y_RNA.311-201ENST00000365068 96 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 SNORD116-1-201ENST00000384335 95 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 PRRC2CP1-201ENST00000404428 159 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 RN7SKP56-201ENST00000410513 331 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 OR8G2P-201ENST00000412796 908 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 FCF1P2-201ENST00000415284 583 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 MTCO3P1-205ENST00000422088 832 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 OR5BE1P-201ENST00000425977 939 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AL513175.1-201ENST00000431492 780 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC083863.1-201ENST00000438811 231 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 HMGB1P37-201ENST00000439613 609 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC114755.5-201ENST00000447760 831 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AL500522.2-201ENST00000448562 343 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 ZNF736P5Y-201ENST00000451173 805 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 RPS15AP1-201ENST00000457423 391 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 RPL21P71-201ENST00000465598 459 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC104689.1-201ENST00000473356 768 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 BZW1P2-201ENST00000473537 826 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 NCOR1P1-202ENST00000486162 291 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC082651.2-201ENST00000496833 166 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 BTF3L4P4-201ENST00000506381 449 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 UBE2NP1-201ENST00000545592 458 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 CBX3P5-201ENST00000552017 521 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC093519.1-201ENST00000566109 298 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC136624.4-201ENST00000573044 370 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC017100.2-201ENST00000584628 355 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC069304.3-201ENST00000603938 1084 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AL022161.1-201ENST00000604390 213 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 RNU4-89P-201ENST00000607443 133 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AC123768.4-201ENST00000616244 701 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 AL512506.2-201ENST00000624472 458 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 OR5BE1P-202ENST00000641168 1176 ntBASIC4.1□□□□□ -1.75
PCDH9Q9HC56 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
PCDH9Q9HC56 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 XIAPP3-201ENST00000312918 795 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 U3.15-201ENST00000365398 212 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AL356095.1-201ENST00000417217 199 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 NPM1P34-201ENST00000428821 893 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 YWHAZP8-201ENST00000436935 731 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 RNA5SP143-201ENST00000516936 115 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 RN7SKP96-201ENST00000516948 297 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 SNORA48.10-201ENST00000516965 160 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms