Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC006445.2-201ENST00000510061 472 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 SCARNA17.1-201ENST00000516211 143 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 SCARNA17.2-201ENST00000516334 143 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS13AQ96RL7 AC233280.2-201ENST00000603917 1070 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 SCARNA17.4-201ENST00000614296 143 ntBASIC2.57□□□□□ -2
VPS13AQ96RL7 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
VPS13AQ96RL7 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS13AQ96RL7 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
VPS13AQ96RL7 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.56□□□□□ -2
VPS13AQ96RL7 RPS26P40-201ENST00000435209 294 ntBASIC2.56□□□□□ -2
VPS13AQ96RL7 AC234781.5-201ENST00000508429 271 ntBASIC2.56□□□□□ -2
VPS13AQ96RL7 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.56□□□□□ -2
VPS13AQ96RL7 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.56□□□□□ -2
VPS13AQ96RL7 AL110115.1-201ENST00000614396 364 ntBASIC2.56□□□□□ -2
VPS13AQ96RL7 METTL8-218ENST00000638989 876 ntTSL 5 BASIC2.56□□□□□ -2
VPS13AQ96RL7 METTL8-219ENST00000640734 726 ntTSL 2 BASIC2.56□□□□□ -2
VPS13AQ96RL7 MTND5P6-201ENST00000422338 1798 ntBASIC2.56□□□□□ -2
VPS13AQ96RL7 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
VPS13AQ96RL7 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS13AQ96RL7 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.56□□□□□ -2
VPS13AQ96RL7 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
VPS13AQ96RL7 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
VPS13AQ96RL7 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
VPS13AQ96RL7 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
VPS13AQ96RL7 AL049610.1-201ENST00000423374 372 ntBASIC2.56□□□□□ -2
VPS13AQ96RL7 AL591623.2-201ENST00000449978 222 ntBASIC2.56□□□□□ -2
VPS13AQ96RL7 AC023043.2-201ENST00000589678 1026 ntBASIC2.56□□□□□ -2
VPS13AQ96RL7 AC010480.1-201ENST00000624823 684 ntBASIC2.56□□□□□ -2
VPS13AQ96RL7 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
VPS13AQ96RL7 RN7SKP58-201ENST00000411010 305 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.55□□□□□ -2
VPS13AQ96RL7 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS13AQ96RL7 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
VPS13AQ96RL7 AC090543.2-201ENST00000483963 348 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 AC108078.3-201ENST00000502633 489 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 AC008716.1-201ENST00000511084 513 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 Y_RNA.670-201ENST00000516255 105 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.55□□□□□ -2
VPS13AQ96RL7 AC006272.2-201ENST00000594725 163 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 Z82195.1-201ENST00000604558 398 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 AC103858.2-201ENST00000621471 543 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.55□□□□□ -2
VPS13AQ96RL7 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.55□□□□□ -2
VPS13AQ96RL7 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.55□□□□□ -2
VPS13AQ96RL7 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.55□□□□□ -2
VPS13AQ96RL7 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS13AQ96RL7 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.55□□□□□ -2
VPS13AQ96RL7 AC096644.4-201ENST00000563417 2912 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC2.55□□□□□ -2
VPS13AQ96RL7 FCF1P1-201ENST00000432690 571 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.55□□□□□ -2
VPS13AQ96RL7 OR6K1P-201ENST00000456766 971 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.55□□□□□ -2
VPS13AQ96RL7 AC090897.3-201ENST00000636973 1157 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
VPS13AQ96RL7 AC093908.1-201ENST00000623125 8092 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS13AQ96RL7 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC2.55□□□□□ -2
VPS13AQ96RL7 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC2.55□□□□□ -2
VPS13AQ96RL7 AC009263.1-201ENST00000441193 1239 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 HMGB1P25-201ENST00000468402 607 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.55□□□□□ -2
VPS13AQ96RL7 VN1R9P-201ENST00000614184 867 ntBASIC2.55□□□□□ -2
VPS13AQ96RL7 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.55□□□□□ -2
VPS13AQ96RL7 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS13AQ96RL7 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC2.54□□□□□ -2
VPS13AQ96RL7 ELL2P4-201ENST00000446870 1376 ntBASIC2.54□□□□□ -2
VPS13AQ96RL7 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.54□□□□□ -2
VPS13AQ96RL7 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC2.54□□□□□ -2
VPS13AQ96RL7 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.54□□□□□ -2
VPS13AQ96RL7 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.54□□□□□ -2
VPS13AQ96RL7 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.54□□□□□ -2
VPS13AQ96RL7 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.54□□□□□ -2
VPS13AQ96RL7 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.54□□□□□ -2
VPS13AQ96RL7 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC2.54□□□□□ -2
VPS13AQ96RL7 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC2.54□□□□□ -2
VPS13AQ96RL7 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
VPS13AQ96RL7 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
VPS13AQ96RL7 RPL23AP22-201ENST00000437556 453 ntBASIC2.54□□□□□ -2
VPS13AQ96RL7 AC107222.1-201ENST00000510899 637 ntBASIC2.54□□□□□ -2
VPS13AQ96RL7 RN7SKP219-201ENST00000516825 296 ntBASIC2.54□□□□□ -2
VPS13AQ96RL7 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.54□□□□□ -2
VPS13AQ96RL7 AL031985.3-201ENST00000565390 2449 ntBASIC2.54□□□□□ -2
VPS13AQ96RL7 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.54□□□□□ -2
VPS13AQ96RL7 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS13AQ96RL7 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC2.54□□□□□ -2
VPS13AQ96RL7 USP8P1-201ENST00000494673 3183 ntBASIC2.54□□□□□ -2
VPS13AQ96RL7 GLRXP1-201ENST00000423261 334 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.53□□□□□ -2
VPS13AQ96RL7 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC2.53□□□□□ -2
VPS13AQ96RL7 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.53□□□□□ -2
VPS13AQ96RL7 ST13P14-201ENST00000474095 734 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 AC091917.2-201ENST00000505002 744 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.53□□□□□ -2
VPS13AQ96RL7 RNA5SP217-201ENST00000515959 91 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.53□□□□□ -2
VPS13AQ96RL7 AC007423.1-201ENST00000605009 627 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13AQ96RL7 RNU1-35P-201ENST00000362782 153 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms