Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC013437.2-201ENST00000639587 677 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.25□□□□□ -1.89
SKA3Q8IX90 MFSD8-236ENST00000641509 4050 ntBASIC3.25□□□□□ -1.89
SKA3Q8IX90 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
SKA3Q8IX90 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SKA3Q8IX90 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
SKA3Q8IX90 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
SKA3Q8IX90 RNU6-236P-201ENST00000363886 106 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 RNU6-298P-201ENST00000390888 96 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 RNU2-37P-201ENST00000410695 177 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 HMGB3P20-201ENST00000417997 600 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SKA3Q8IX90 RPP40P1-201ENST00000426762 456 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC092634.2-201ENST00000428146 1010 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 OR51AB1P-201ENST00000429046 620 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 RPL7P59-201ENST00000447700 943 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 Z99714.1-201ENST00000450463 807 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 MTATP6P14-201ENST00000455189 673 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 TMED11P-201ENST00000479478 690 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 RPL21P103-201ENST00000479921 488 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC011352.3-201ENST00000505162 593 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 PCBP2P3-201ENST00000509726 843 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 TXNP6-201ENST00000510190 310 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC048346.1-201ENST00000510247 144 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC010374.2-201ENST00000512933 535 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC093755.1-201ENST00000512950 1023 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 snoZ278.1-201ENST00000517059 112 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 RNU6-1028P-201ENST00000517164 93 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC007991.1-201ENST00000522680 631 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 NDUFS5P6-201ENST00000529136 295 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC118942.1-201ENST00000529674 1035 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 HSPE1P14-201ENST00000605812 302 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AP005137.2-201ENST00000609238 400 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 AC121761.2-201ENST00000617300 689 ntBASIC3.24□□□□□ -1.89
SKA3Q8IX90 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SKA3Q8IX90 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.24□□□□□ -1.89
SKA3Q8IX90 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SKA3Q8IX90 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SKA3Q8IX90 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 Y_RNA.126-201ENST00000363382 111 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 RNU6-1243P-201ENST00000364028 107 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 Y_RNA.578-201ENST00000390903 88 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL391417.1-201ENST00000404100 426 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL445189.1-201ENST00000405722 338 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 RN7SKP202-201ENST00000410439 330 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 CYCSP19-201ENST00000411715 316 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 RPS6P14-201ENST00000425165 719 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 C1DP1-201ENST00000426049 402 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 MTCYBP32-201ENST00000427945 1084 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 ZNF33CP-201ENST00000432492 2030 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 NDUFB1P1-201ENST00000435191 180 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 PTGES3P1-201ENST00000439531 483 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 RPS26P56-201ENST00000444468 240 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SKA3Q8IX90 Z77249.1-201ENST00000444622 1175 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SKA3Q8IX90 RPS27P29-201ENST00000463110 252 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC104982.1-201ENST00000478775 574 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC108043.1-201ENST00000512696 574 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC023632.1-201ENST00000518463 375 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AC010376.1-201ENST00000522101 334 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 AP001207.1-201ENST00000524051 481 ntBASIC3.23□□□□□ -1.89
SKA3Q8IX90 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.23□□□□□ -1.89
SKA3Q8IX90 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms