Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AL035458.1-201ENST00000433096 585 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC006326.1-201ENST00000445465 787 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 EIF4EBP2P1-201ENST00000450009 343 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 TRBV8-1-201ENST00000481590 279 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC008565.1-201ENST00000509046 885 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC025768.1-201ENST00000510057 267 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC147055.3-201ENST00000510547 851 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 RNA5SP315-201ENST00000516340 116 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 RNA5SP312-201ENST00000517068 116 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AP003730.1-201ENST00000524605 285 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 RGS4-209ENST00000531057 544 ntTSL 4 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AHI1-217ENST00000534469 680 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 MIR4270-201ENST00000581799 70 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 MIR4276-201ENST00000584832 70 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC022001.1-201ENST00000605193 268 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 MIR7109-201ENST00000613748 65 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 MIR622-201ENST00000638396 96 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC139713.2-210ENST00000641741 992 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 MTND4P1-201ENST00000457501 1466 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AL355596.1-201ENST00000565399 3996 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 ZNF658B-202ENST00000615961 3375 ntBASIC1.65□□□□□ -2.14
LINC00643Q86TS7 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.14
LINC00643Q86TS7 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC1.65□□□□□ -2.14
LINC00643Q86TS7 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC096656.1-201ENST00000623826 1364 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC007342.9-201ENST00000623877 1385 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 RNA5SP242-201ENST00000364171 118 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 SNORD67-201ENST00000390833 111 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC240504.1-201ENST00000395709 845 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 U3.40-201ENST00000408706 208 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC013404.1-201ENST00000413068 249 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AL355433.1-201ENST00000422804 300 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 HMGN2P38-201ENST00000423806 265 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC011242.1-201ENST00000433596 1158 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC091862.1-201ENST00000438016 1100 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC016696.1-201ENST00000446949 318 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AL513343.1-201ENST00000451818 792 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC105137.1-201ENST00000484355 562 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AK3P4-201ENST00000504283 583 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 RN7SKP92-201ENST00000517266 244 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC025755.1-201ENST00000521306 278 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC104115.2-201ENST00000523026 687 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 CSNK1A1P1-202ENST00000563423 981 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC138207.8-204ENST00000579588 527 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC009220.3-201ENST00000604318 586 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC106791.2-201ENST00000604680 391 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC106028.5-201ENST00000610332 395 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AL445567.2-201ENST00000618935 498 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AC098657.3-201ENST00000620434 263 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 CU459211.1-201ENST00000635667 749 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 AL590763.1-201ENST00000398297 1545 ntBASIC1.65□□□□□ -2.15
LINC00643Q86TS7 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
LINC00643Q86TS7 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 ZNF807-201ENST00000328088 1707 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 MIR323A-201ENST00000362199 86 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 RNA5SP447-201ENST00000363749 119 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms