Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 RNA5SP380-201ENST00000517190 98 ntBASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 AC096947.1-201ENST00000603233 470 ntBASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
CCDC88AQ3V6T2 RNU1-35P-201ENST00000362782 153 ntBASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 RN7SKP58-201ENST00000411010 305 ntBASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AC006111.3-201ENST00000622137 383 ntBASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AC007336.1-201ENST00000576365 3828 ntBASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AC106901.1-201ENST00000425086 698 ntBASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AC090525.1-201ENST00000479116 478 ntBASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 AC007318.2-201ENST00000620999 243 ntBASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC88AQ3V6T2 MAPK10-362ENST00000641864 4484 ntBASIC3.46□□□□□ -1.85
CCDC88AQ3V6T2 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 ATP5F1P6-201ENST00000402768 767 ntBASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 AL139415.2-201ENST00000431968 163 ntBASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 RPL23AP23-201ENST00000452590 471 ntBASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 AC117522.3-201ENST00000507974 584 ntBASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 AP002770.2-201ENST00000543613 532 ntBASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 AL158827.2-201ENST00000602494 330 ntBASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 AL691447.3-201ENST00000635020 330 ntBASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 Z73965.1-201ENST00000623412 2297 ntBASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC88AQ3V6T2 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 MIR512-1-201ENST00000384913 84 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 MIR592-201ENST00000384959 97 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 AC008837.1-201ENST00000511513 412 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 AC107016.2-201ENST00000547968 190 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 CUL4AP1-201ENST00000514750 1863 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 MIR764-201ENST00000390811 85 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 GLS-203ENST00000409215 632 ntTSL 4 BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 HMGN2P3-201ENST00000433603 273 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 HMGN2P5-201ENST00000436882 273 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 AC105402.2-201ENST00000438503 358 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 RNA5SP148-201ENST00000516527 94 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 RN7SKP60-201ENST00000516985 239 ntBASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC88AQ3V6T2 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 ZNF542P-204ENST00000482727 1305 ntBASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 RNA5SP274-201ENST00000410484 108 ntBASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 BX276092.3-201ENST00000424182 230 ntBASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 AP000873.5-201ENST00000533906 236 ntBASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 AC004825.2-201ENST00000616634 455 ntBASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 MAPK10-373ENST00000641983 6772 ntBASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 AC008725.1-201ENST00000605123 2263 ntBASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 AC093831.2-201ENST00000624393 3427 ntBASIC3.44□□□□□ -1.86
CCDC88AQ3V6T2 AL138827.1-201ENST00000402666 306 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 HMGB3P23-201ENST00000414981 585 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 UQCRHP3-201ENST00000451503 251 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 RPL7P20-201ENST00000520308 745 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 SERPINE4P-201ENST00000554978 281 ntBASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC88AQ3V6T2 AL392112.1-201ENST00000605115 829 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms