Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR607-201ENST00000385241 96 ntBASIC3.52□□□□□ -1.85
CDX1P47902 RPL23AP29-201ENST00000397284 453 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AL031679.1-201ENST00000400616 525 ntBASIC3.52□□□□□ -1.85
CDX1P47902 RNU6-757P-201ENST00000410334 100 ntBASIC3.52□□□□□ -1.85
CDX1P47902 RNU6-712P-201ENST00000410558 100 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.52□□□□□ -1.85
CDX1P47902 AC092447.6-201ENST00000414578 210 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.52□□□□□ -1.85
CDX1P47902 P2RY10P2-201ENST00000416730 913 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 XKRYP1-201ENST00000423438 492 ntBASIC3.52□□□□□ -1.85
CDX1P47902 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 RPS12P10-201ENST00000427031 377 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AL590233.1-201ENST00000430017 456 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC016712.1-201ENST00000431088 378 ntBASIC3.52□□□□□ -1.85
CDX1P47902 XKRYP2-201ENST00000432915 492 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC011998.1-201ENST00000433403 117 ntBASIC3.52□□□□□ -1.85
CDX1P47902 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 RPL23AP93-201ENST00000440847 484 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.52□□□□□ -1.85
CDX1P47902 RPS4XP10-201ENST00000465034 731 ntBASIC3.52□□□□□ -1.85
CDX1P47902 HMGB1P25-201ENST00000468402 607 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC010285.1-201ENST00000470580 392 ntBASIC3.52□□□□□ -1.85
CDX1P47902 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 AC013356.1-201ENST00000489027 564 ntBASIC3.52□□□□□ -1.85
CDX1P47902 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.52□□□□□ -1.85
CDX1P47902 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3.52□□□□□ -1.85
CDX1P47902 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 AC093281.2-201ENST00000510153 597 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC093840.1-201ENST00000511599 336 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 RNA5SP309-201ENST00000516670 106 ntBASIC3.52□□□□□ -1.85
CDX1P47902 RNA5SP143-201ENST00000516936 115 ntBASIC3.52□□□□□ -1.85
CDX1P47902 SNORA31.20-201ENST00000517111 133 ntBASIC3.52□□□□□ -1.85
CDX1P47902 RNU6-1073P-201ENST00000517182 106 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.52□□□□□ -1.85
CDX1P47902 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.52□□□□□ -1.85
CDX1P47902 DEFB131D-201ENST00000526803 184 ntBASIC3.52□□□□□ -1.85
CDX1P47902 MED28P5-201ENST00000528254 438 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC109635.4-202ENST00000531666 412 ntBASIC3.52□□□□□ -1.85
CDX1P47902 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 TOMM20P2-201ENST00000540082 421 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC023050.2-201ENST00000544968 387 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.52□□□□□ -1.85
CDX1P47902 AC087465.1-201ENST00000560574 245 ntBASIC3.52□□□□□ -1.85
CDX1P47902 MIR4277-201ENST00000578298 84 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC091178.1-203ENST00000584586 279 ntBASIC3.52□□□□□ -1.85
CDX1P47902 VN1R78P-201ENST00000597393 564 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AL451044.1-201ENST00000604867 238 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AL355816.2-201ENST00000610049 647 ntBASIC3.52□□□□□ -1.85
CDX1P47902 TUSC7.1-201ENST00000610969 165 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC012409.3-201ENST00000611343 981 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AC112200.1-201ENST00000625015 234 ntBASIC3.52□□□□□ -1.85
CDX1P47902 TEX41-256ENST00000626411 368 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CDX1P47902 AC097714.1-201ENST00000511272 1647 ntBASIC3.52□□□□□ -1.85
CDX1P47902 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CDX1P47902 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.51□□□□□ -1.85
CDX1P47902 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.51□□□□□ -1.85
CDX1P47902 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CDX1P47902 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.51□□□□□ -1.85
CDX1P47902 AP001350.1-201ENST00000601906 1524 ntBASIC3.51□□□□□ -1.85
CDX1P47902 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CDX1P47902 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
CDX1P47902 RNA5SP151-201ENST00000365632 117 ntBASIC3.51□□□□□ -1.85
CDX1P47902 ATP5F1P4-201ENST00000397288 746 ntBASIC3.51□□□□□ -1.85
CDX1P47902 HMGB1P17-201ENST00000403495 628 ntBASIC3.51□□□□□ -1.85
CDX1P47902 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.51□□□□□ -1.85
CDX1P47902 RAB28P1-201ENST00000411517 641 ntBASIC3.51□□□□□ -1.85
CDX1P47902 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.51□□□□□ -1.85
CDX1P47902 AL159169.1-201ENST00000421119 127 ntBASIC3.51□□□□□ -1.85
CDX1P47902 RPL7P53-201ENST00000421245 739 ntBASIC3.51□□□□□ -1.85
CDX1P47902 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
CDX1P47902 COX6CP17-201ENST00000421389 185 ntBASIC3.51□□□□□ -1.85
CDX1P47902 RAD23BP1-201ENST00000421404 1227 ntBASIC3.51□□□□□ -1.85
CDX1P47902 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.51□□□□□ -1.85
CDX1P47902 RPL21P66-201ENST00000426566 466 ntBASIC3.51□□□□□ -1.85
CDX1P47902 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.51□□□□□ -1.85
CDX1P47902 MTND4LP10-201ENST00000435146 291 ntBASIC3.51□□□□□ -1.85
CDX1P47902 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.51□□□□□ -1.85
CDX1P47902 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CDX1P47902 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.51□□□□□ -1.85
CDX1P47902 Z95327.1-201ENST00000446082 482 ntBASIC3.51□□□□□ -1.85
CDX1P47902 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.51□□□□□ -1.85
CDX1P47902 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.51□□□□□ -1.85
CDX1P47902 AL445669.2-201ENST00000454425 421 ntBASIC3.51□□□□□ -1.85
CDX1P47902 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.51□□□□□ -1.85
CDX1P47902 AP001992.1-205ENST00000462248 379 ntBASIC3.51□□□□□ -1.85
CDX1P47902 AC053481.1-201ENST00000467217 306 ntBASIC3.51□□□□□ -1.85
CDX1P47902 ST13P14-201ENST00000474095 734 ntBASIC3.51□□□□□ -1.85
CDX1P47902 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.51□□□□□ -1.85
CDX1P47902 COX7A2P2-201ENST00000505291 250 ntBASIC3.51□□□□□ -1.85
CDX1P47902 AC104090.1-201ENST00000506341 1171 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms