Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSX2P35548 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.76□□□□□ -1.65
MSX2P35548 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
MSX2P35548 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.76□□□□□ -1.65
MSX2P35548 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.76□□□□□ -1.65
MSX2P35548 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.76□□□□□ -1.65
MSX2P35548 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.76□□□□□ -1.65
MSX2P35548 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX2P35548 FRG1BP-201ENST00000278882 761 ntBASIC4.76□□□□□ -1.65
MSX2P35548 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.76□□□□□ -1.65
MSX2P35548 FRG1CP-201ENST00000358464 769 ntBASIC4.76□□□□□ -1.65
MSX2P35548 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
MSX2P35548 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX2P35548 Y_RNA.72-201ENST00000362894 103 ntBASIC4.76□□□□□ -1.65
MSX2P35548 RNY3P3-201ENST00000363816 102 ntBASIC4.76□□□□□ -1.65
MSX2P35548 RNA5SP234-201ENST00000363916 119 ntBASIC4.76□□□□□ -1.65
MSX2P35548 Y_RNA.548-201ENST00000384656 105 ntBASIC4.76□□□□□ -1.65
MSX2P35548 SNORD96B-201ENST00000386148 79 ntBASIC4.76□□□□□ -1.65
MSX2P35548 RPS20P2-201ENST00000402520 389 ntBASIC4.76□□□□□ -1.65
MSX2P35548 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.76□□□□□ -1.65
MSX2P35548 RPL31P52-201ENST00000407532 367 ntBASIC4.76□□□□□ -1.65
MSX2P35548 RNA5SP178-201ENST00000410380 128 ntBASIC4.76□□□□□ -1.65
MSX2P35548 E2F6P2-201ENST00000420708 748 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AF228730.4-201ENST00000421457 183 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AC079355.1-201ENST00000421770 223 ntBASIC4.76□□□□□ -1.65
MSX2P35548 RPL7P57-201ENST00000423238 740 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC4.76□□□□□ -1.65
MSX2P35548 EIF4HP2-201ENST00000424380 563 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
MSX2P35548 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.76□□□□□ -1.65
MSX2P35548 AL450023.3-201ENST00000440592 271 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.76□□□□□ -1.65
MSX2P35548 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX2P35548 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
MSX2P35548 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.76□□□□□ -1.65
MSX2P35548 RN7SL51P-201ENST00000468230 285 ntBASIC4.76□□□□□ -1.65
MSX2P35548 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC4.76□□□□□ -1.65
MSX2P35548 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
MSX2P35548 RNU6-445P-201ENST00000516949 107 ntBASIC4.76□□□□□ -1.65
MSX2P35548 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
MSX2P35548 AP003181.2-201ENST00000528941 181 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AC087477.6-201ENST00000559595 843 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC4.76□□□□□ -1.65
MSX2P35548 AC034268.2-201ENST00000571784 482 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.76□□□□□ -1.65
MSX2P35548 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.76□□□□□ -1.65
MSX2P35548 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.76□□□□□ -1.65
MSX2P35548 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.76□□□□□ -1.65
MSX2P35548 AC010928.1-201ENST00000592477 1447 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AC008687.2-201ENST00000597865 520 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AC068790.5-201ENST00000602741 355 ntBASIC4.76□□□□□ -1.65
MSX2P35548 AC007621.1-201ENST00000604544 437 ntBASIC4.76□□□□□ -1.65
MSX2P35548 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.76□□□□□ -1.65
MSX2P35548 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.76□□□□□ -1.65
MSX2P35548 RMST_3.1-201ENST00000611651 109 ntBASIC4.76□□□□□ -1.65
MSX2P35548 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.76□□□□□ -1.65
MSX2P35548 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.76□□□□□ -1.65
MSX2P35548 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
MSX2P35548 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
MSX2P35548 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX2P35548 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.76□□□□□ -1.65
MSX2P35548 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
MSX2P35548 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX2P35548 AC024560.2-201ENST00000507981 1497 ntBASIC4.75□□□□□ -1.65
MSX2P35548 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 AC235565.1-201ENST00000456962 1325 ntBASIC4.75□□□□□ -1.65
MSX2P35548 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX2P35548 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX2P35548 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX2P35548 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX2P35548 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX2P35548 OR5J1P-201ENST00000313544 939 ntBASIC4.75□□□□□ -1.65
MSX2P35548 OR52B1P-201ENST00000316506 909 ntBASIC4.75□□□□□ -1.65
MSX2P35548 RNU6-451P-201ENST00000362921 107 ntBASIC4.75□□□□□ -1.65
MSX2P35548 Y_RNA.460-201ENST00000384255 102 ntBASIC4.75□□□□□ -1.65
MSX2P35548 Y_RNA.481-201ENST00000384373 102 ntBASIC4.75□□□□□ -1.65
MSX2P35548 RNU6-332P-201ENST00000391193 108 ntBASIC4.75□□□□□ -1.65
MSX2P35548 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 AL359704.1-201ENST00000411586 781 ntBASIC4.75□□□□□ -1.65
MSX2P35548 RSU1P3-201ENST00000412878 835 ntBASIC4.75□□□□□ -1.65
MSX2P35548 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 AL354751.2-201ENST00000415471 210 ntBASIC4.75□□□□□ -1.65
MSX2P35548 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 SLC35E1P1-201ENST00000419313 864 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX2P35548 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 RGS17P1-201ENST00000423358 553 ntBASIC4.75□□□□□ -1.65
MSX2P35548 USP9YP9-201ENST00000429406 715 ntBASIC4.75□□□□□ -1.65
MSX2P35548 GTF2IP20-201ENST00000431663 360 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.75□□□□□ -1.65
MSX2P35548 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.75□□□□□ -1.65
MSX2P35548 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.75□□□□□ -1.65
MSX2P35548 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 CBX1P1-201ENST00000440184 427 ntBASIC4.75□□□□□ -1.65
MSX2P35548 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX2P35548 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX2P35548 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms