Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.33□□□□□ -1.88
COL5A3P25940 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
COL5A3P25940 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL5A3P25940 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.32□□□□□ -1.88
COL5A3P25940 AP000526.1-201ENST00000603308 1388 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
COL5A3P25940 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.32□□□□□ -1.88
COL5A3P25940 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL5A3P25940 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.32□□□□□ -1.88
COL5A3P25940 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
COL5A3P25940 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
COL5A3P25940 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.32□□□□□ -1.88
COL5A3P25940 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.32□□□□□ -1.88
COL5A3P25940 HMGB3P23-201ENST00000414981 585 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL5A3P25940 AL139415.2-201ENST00000431968 163 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 AL603825.1-201ENST00000438481 80 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.32□□□□□ -1.88
COL5A3P25940 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL5A3P25940 RN7SL442P-201ENST00000473804 320 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 AC093278.1-201ENST00000494700 600 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
COL5A3P25940 KLHL2P1-201ENST00000508691 521 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.32□□□□□ -1.88
COL5A3P25940 AC092851.1-201ENST00000535964 478 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.32□□□□□ -1.88
COL5A3P25940 AP002770.2-201ENST00000543613 532 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 AC010338.1-201ENST00000621823 717 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 AC092608.2-201ENST00000624427 218 ntBASIC3.32□□□□□ -1.88
COL5A3P25940 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.32□□□□□ -1.88
COL5A3P25940 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
COL5A3P25940 AL353743.4-201ENST00000422653 1547 ntBASIC3.31□□□□□ -1.88
COL5A3P25940 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.31□□□□□ -1.88
COL5A3P25940 MTCO1P39-201ENST00000426148 480 ntBASIC3.31□□□□□ -1.88
COL5A3P25940 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.31□□□□□ -1.88
COL5A3P25940 MTCYBP19-201ENST00000517463 1124 ntBASIC3.31□□□□□ -1.88
COL5A3P25940 AC008126.1-201ENST00000549019 480 ntBASIC3.31□□□□□ -1.88
COL5A3P25940 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.31□□□□□ -1.88
COL5A3P25940 AC103810.6-201ENST00000606708 136 ntBASIC3.31□□□□□ -1.88
COL5A3P25940 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.31□□□□□ -1.88
COL5A3P25940 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC3.31□□□□□ -1.88
COL5A3P25940 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.31□□□□□ -1.88
COL5A3P25940 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.31□□□□□ -1.88
COL5A3P25940 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL5A3P25940 SNORA36C-201ENST00000384289 132 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.3□□□□□ -1.88
COL5A3P25940 VDAC1P3-201ENST00000434069 851 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 HMGB3P8-201ENST00000449709 577 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 RPL23AP15-201ENST00000450202 459 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 AP004217.1-201ENST00000480579 346 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 RPS29P21-201ENST00000496272 170 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.3□□□□□ -1.88
COL5A3P25940 DYNLL1P6-201ENST00000503440 264 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A3P25940 RFPL1S-203ENST00000539579 330 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A3P25940 AC110741.2-201ENST00000605278 268 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL5A3P25940 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL5A3P25940 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.3□□□□□ -1.88
COL5A3P25940 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.3□□□□□ -1.88
COL5A3P25940 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
COL5A3P25940 MIR504-201ENST00000385065 83 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 MIR764-201ENST00000390811 85 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 AC004987.3-201ENST00000413879 771 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 RPLP0P7-201ENST00000416050 667 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 OR6K1P-201ENST00000456766 971 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 AC021205.1-201ENST00000468797 348 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 AC078785.3-201ENST00000476607 425 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.3□□□□□ -1.88
COL5A3P25940 AP003102.1-201ENST00000525638 661 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 PDCD5P1-201ENST00000543528 309 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.3□□□□□ -1.88
COL5A3P25940 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
COL5A3P25940 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL5A3P25940 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC3.3□□□□□ -1.88
COL5A3P25940 AC016542.2-201ENST00000624201 619 ntBASIC3.3□□□□□ -1.88
COL5A3P25940 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
COL5A3P25940 OR11H5P-202ENST00000641612 1325 ntBASIC3.29□□□□□ -1.88
COL5A3P25940 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL5A3P25940 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
COL5A3P25940 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL5A3P25940 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
COL5A3P25940 RNU6-984P-201ENST00000363236 109 ntBASIC3.29□□□□□ -1.88
COL5A3P25940 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.29□□□□□ -1.88
COL5A3P25940 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.29□□□□□ -1.88
COL5A3P25940 RPL23AP23-201ENST00000452590 471 ntBASIC3.29□□□□□ -1.88
COL5A3P25940 Y_RNA.676-201ENST00000516393 96 ntBASIC3.29□□□□□ -1.88
COL5A3P25940 HPRT1P3-201ENST00000539521 576 ntBASIC3.29□□□□□ -1.88
COL5A3P25940 AL392112.1-201ENST00000605115 829 ntBASIC3.29□□□□□ -1.88
COL5A3P25940 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.29□□□□□ -1.88
COL5A3P25940 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.29□□□□□ -1.88
COL5A3P25940 AC241585.2-209ENST00000638217 143 ntBASIC3.29□□□□□ -1.88
COL5A3P25940 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.28□□□□□ -1.88
COL5A3P25940 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A3P25940 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.28□□□□□ -1.88
COL5A3P25940 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A3P25940 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A3P25940 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.28□□□□□ -1.88
COL5A3P25940 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms