Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC135721.1-201ENST00000497954 479 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL6A3P12111 SNORA4-201ENST00000584302 138 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 AC103810.6-201ENST00000606708 136 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 AC106730.3-201ENST00000624568 641 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.79□□□□□ -1.96
COL6A3P12111 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.79□□□□□ -1.96
COL6A3P12111 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL6A3P12111 U8.13-201ENST00000390842 128 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 AC006989.1-201ENST00000427212 131 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL6A3P12111 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC2.79□□□□□ -1.96
COL6A3P12111 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC2.79□□□□□ -1.96
COL6A3P12111 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
COL6A3P12111 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
COL6A3P12111 MTND5P6-201ENST00000422338 1798 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL6A3P12111 NR1H5P-201ENST00000452683 1377 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 CR381670.1-201ENST00000624291 1693 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
COL6A3P12111 AL359511.1-201ENST00000402970 211 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL6A3P12111 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC2.78□□□□□ -1.96
COL6A3P12111 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.78□□□□□ -1.96
COL6A3P12111 Z99127.3-201ENST00000448158 395 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 RPL29P29-201ENST00000448725 423 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 TRBV8-2-201ENST00000475637 270 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.78□□□□□ -1.96
COL6A3P12111 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC2.78□□□□□ -1.96
COL6A3P12111 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
COL6A3P12111 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC2.78□□□□□ -1.96
COL6A3P12111 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL6A3P12111 Y_RNA.295-201ENST00000364918 102 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC2.78□□□□□ -1.96
COL6A3P12111 RPS26P30-201ENST00000443431 335 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.78□□□□□ -1.96
COL6A3P12111 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC2.78□□□□□ -1.96
COL6A3P12111 AC069499.1-201ENST00000489433 509 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC2.78□□□□□ -1.96
COL6A3P12111 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC2.78□□□□□ -1.96
COL6A3P12111 IGHV3-63-201ENST00000518422 341 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 Z82195.1-201ENST00000604558 398 ntBASIC2.78□□□□□ -1.96
COL6A3P12111 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.78□□□□□ -1.96
COL6A3P12111 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC2.78□□□□□ -1.96
COL6A3P12111 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL6A3P12111 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
COL6A3P12111 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL6A3P12111 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
COL6A3P12111 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL6A3P12111 AL139276.1-201ENST00000311910 1001 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 MIR378A-201ENST00000362177 66 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 AC093663.2-201ENST00000484625 313 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.77□□□□□ -1.97
COL6A3P12111 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC2.77□□□□□ -1.97
COL6A3P12111 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.77□□□□□ -1.97
COL6A3P12111 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
COL6A3P12111 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
COL6A3P12111 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
COL6A3P12111 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL6A3P12111 MIR1276-201ENST00000408707 83 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 KATNBL1P2-201ENST00000433311 835 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.77□□□□□ -1.97
COL6A3P12111 CYCSP20-201ENST00000473154 315 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 TRMT112P2-201ENST00000512910 132 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
COL6A3P12111 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC2.77□□□□□ -1.97
COL6A3P12111 AL133271.1-201ENST00000538229 291 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 HMGB1P50-201ENST00000605814 607 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC2.77□□□□□ -1.97
COL6A3P12111 AC095038.3-201ENST00000634439 195 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
COL6A3P12111 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL6A3P12111 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL6A3P12111 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC2.77□□□□□ -1.97
COL6A3P12111 RPL23AP42-201ENST00000471152 471 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 AC026412.2-201ENST00000512270 1075 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.77□□□□□ -1.97
COL6A3P12111 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC2.77□□□□□ -1.97
COL6A3P12111 AC110994.2-201ENST00000635481 492 ntBASIC2.77□□□□□ -1.97
COL6A3P12111 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC2.77□□□□□ -1.97
COL6A3P12111 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
COL6A3P12111 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
COL6A3P12111 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL6A3P12111 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC2.76□□□□□ -1.97
COL6A3P12111 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
COL6A3P12111 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL6A3P12111 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.76□□□□□ -1.97
COL6A3P12111 RPL5P13-201ENST00000462840 709 ntBASIC2.76□□□□□ -1.97
COL6A3P12111 SRIP1-201ENST00000489235 288 ntBASIC2.76□□□□□ -1.97
COL6A3P12111 AC106872.3-201ENST00000495104 446 ntBASIC2.76□□□□□ -1.97
COL6A3P12111 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC2.76□□□□□ -1.97
COL6A3P12111 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.76□□□□□ -1.97
COL6A3P12111 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC2.76□□□□□ -1.97
COL6A3P12111 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.76□□□□□ -1.97
COL6A3P12111 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC2.76□□□□□ -1.97
COL6A3P12111 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL6A3P12111 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL6A3P12111 GABPAP-201ENST00000419271 1356 ntBASIC2.76□□□□□ -1.97
COL6A3P12111 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms