Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A1P12109 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.34□□□□□ -1.55
COL6A1P12109 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A1P12109 RNU6-433P-201ENST00000363216 104 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AL359837.1-201ENST00000381357 287 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 RNU6-1122P-201ENST00000384449 107 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 RNU6-297P-201ENST00000384636 107 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AL035079.1-201ENST00000405210 287 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AL445189.1-201ENST00000405722 338 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC009237.5-201ENST00000414271 501 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC5.34□□□□□ -1.55
COL6A1P12109 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.34□□□□□ -1.55
COL6A1P12109 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A1P12109 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.34□□□□□ -1.55
COL6A1P12109 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC5.34□□□□□ -1.55
COL6A1P12109 AC013267.1-201ENST00000458227 267 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC023424.1-201ENST00000496058 459 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 HMGB1P28-201ENST00000507778 552 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.34□□□□□ -1.55
COL6A1P12109 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.34□□□□□ -1.55
COL6A1P12109 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.34□□□□□ -1.55
COL6A1P12109 RNU6-885P-201ENST00000516607 104 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 RNU6-1261P-201ENST00000517194 104 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.34□□□□□ -1.55
COL6A1P12109 AP002748.2-201ENST00000528671 348 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC104383.1-201ENST00000530297 370 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC027369.5-201ENST00000533838 755 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC5.34□□□□□ -1.55
COL6A1P12109 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.34□□□□□ -1.55
COL6A1P12109 AC022884.2-201ENST00000578535 580 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 MIR5699-201ENST00000578903 90 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 BNIP3P8-201ENST00000597863 560 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC233280.2-201ENST00000603917 1070 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC010680.3-201ENST00000604215 520 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC245389.1-201ENST00000605141 529 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.34□□□□□ -1.55
COL6A1P12109 AL592295.2-201ENST00000612578 206 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC104260.1-201ENST00000616660 539 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC018926.3-201ENST00000618841 406 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC5.34□□□□□ -1.55
COL6A1P12109 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC5.34□□□□□ -1.55
COL6A1P12109 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL6A1P12109 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A1P12109 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A1P12109 AL442639.1-201ENST00000625030 1899 ntBASIC5.34□□□□□ -1.55
COL6A1P12109 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A1P12109 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.34□□□□□ -1.56
COL6A1P12109 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL6A1P12109 XPOTP1-201ENST00000443317 2398 ntBASIC5.34□□□□□ -1.56
COL6A1P12109 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL6A1P12109 AC002525.1-201ENST00000624392 1622 ntBASIC5.34□□□□□ -1.56
COL6A1P12109 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
COL6A1P12109 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.34□□□□□ -1.56
COL6A1P12109 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A1P12109 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
COL6A1P12109 MTND4P16-201ENST00000466108 1367 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A1P12109 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL6A1P12109 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A1P12109 RNU6-582P-201ENST00000362989 107 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 RNU6-181P-201ENST00000363225 107 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 RNU6-984P-201ENST00000363236 109 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 Y_RNA.296-201ENST00000364930 108 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A1P12109 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A1P12109 SNORA5.1-201ENST00000384275 131 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
COL6A1P12109 Y_RNA.598-201ENST00000410480 95 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 RPS12P10-201ENST00000427031 377 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.33□□□□□ -1.56
COL6A1P12109 AC008065.1-201ENST00000428525 348 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC5.33□□□□□ -1.56
COL6A1P12109 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC5.33□□□□□ -1.56
COL6A1P12109 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.33□□□□□ -1.56
COL6A1P12109 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.33□□□□□ -1.56
COL6A1P12109 BTF3P10-201ENST00000433415 495 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 AL022238.1-201ENST00000442557 355 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A1P12109 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A1P12109 snoU13.22-201ENST00000459428 104 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
COL6A1P12109 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC5.33□□□□□ -1.56
COL6A1P12109 AC091868.1-201ENST00000508746 304 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 SNORA20.3-201ENST00000516880 132 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A1P12109 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.33□□□□□ -1.56
COL6A1P12109 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.33□□□□□ -1.56
COL6A1P12109 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A1P12109 AC137800.2-201ENST00000574375 120 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 AC067852.4-201ENST00000590314 478 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 AL359535.1-201ENST00000612100 1087 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 AC002553.4-201ENST00000616896 331 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 AL445567.2-201ENST00000618935 498 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A1P12109 RNA5SP196-201ENST00000625967 102 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 CRYM-AS1-204ENST00000637983 556 ntBASIC5.33□□□□□ -1.56
COL6A1P12109 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A1P12109 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A1P12109 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms