Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXD4P09016 RN7SL330P-201ENST00000469709 307 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 RPL7P49-201ENST00000471402 708 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 AC073522.1-201ENST00000483312 377 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 RPS4XP15-201ENST00000489210 795 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD4P09016 AC091951.3-201ENST00000504093 246 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 MTATP6P22-201ENST00000507369 598 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD4P09016 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXD4P09016 IGJP1-201ENST00000522682 475 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 MTCO2P15-201ENST00000532655 656 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXD4P09016 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD4P09016 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD4P09016 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD4P09016 AC090312.2-201ENST00000582687 378 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 AP001542.2-201ENST00000593141 364 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 VN1R78P-201ENST00000597393 564 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 AC091057.2-201ENST00000602594 792 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 AC025588.2-201ENST00000604851 466 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD4P09016 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD4P09016 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD4P09016 MTND2P41-201ENST00000637599 773 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD4P09016 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXD4P09016 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD4P09016 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD4P09016 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
HOXD4P09016 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD4P09016 ZNF876P-202ENST00000398732 1485 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 LINC00561-201ENST00000565815 2738 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 SNORA73.2-201ENST00000364946 201 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD4P09016 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD4P09016 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD4P09016 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD4P09016 AL079342.2-201ENST00000403367 482 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 RPL7AP73-201ENST00000413490 353 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 OR4K6P-201ENST00000416478 897 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 Z75741.2-201ENST00000417272 1167 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 HMGB1P49-201ENST00000418882 569 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC010099.3-201ENST00000423896 409 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD4P09016 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD4P09016 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD4P09016 USP9YP7-201ENST00000436723 430 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD4P09016 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXD4P09016 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD4P09016 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD4P09016 USP9YP32-201ENST00000452432 430 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXD4P09016 VN1R40P-201ENST00000455196 941 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 USP9YP25-201ENST00000457708 443 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD4P09016 RPL23AP14-201ENST00000468281 468 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 RN7SL323P-201ENST00000494712 295 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD4P09016 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD4P09016 RNU6-416P-201ENST00000516265 103 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 RNA5SP179-201ENST00000517284 121 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD4P09016 AC010306.1-201ENST00000523223 1117 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AP001636.2-201ENST00000525517 696 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AP000619.3-201ENST00000535634 1127 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXD4P09016 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD4P09016 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXD4P09016 MIR5708-201ENST00000579723 85 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXD4P09016 AC061975.8-201ENST00000587058 721 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD4P09016 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD4P09016 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD4P09016 AC069304.3-201ENST00000603938 1084 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC010680.3-201ENST00000604215 520 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC010680.4-201ENST00000605334 543 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC016877.3-201ENST00000606778 504 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC007349.4-201ENST00000608114 532 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AP000238.1-201ENST00000608759 426 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD4P09016 AC019176.2-201ENST00000611579 315 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC024257.5-201ENST00000612739 531 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC005344.1-201ENST00000613391 459 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AC084757.4-201ENST00000616350 526 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXD4P09016 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD4P09016 AC109454.4-201ENST00000623411 649 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 ZNF663P-202ENST00000641770 1131 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD4P09016 MTCO1P14-201ENST00000441695 1559 ntBASIC3.55□□□□□ -1.84
HOXD4P09016 AP004289.2-201ENST00000444413 1457 ntBASIC3.54□□□□□ -1.84
HOXD4P09016 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD4P09016 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXD4P09016 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
HOXD4P09016 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms