Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC066616.2-201ENST00000559334 1481 ntBASIC3.61□□□□□ -1.83
SDC3O75056 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
SDC3O75056 RNA5SP50-201ENST00000363731 107 ntBASIC3.61□□□□□ -1.83
SDC3O75056 RNU6-619P-201ENST00000365146 108 ntBASIC3.61□□□□□ -1.83
SDC3O75056 TAF13P2-201ENST00000416876 286 ntBASIC3.61□□□□□ -1.83
SDC3O75056 MTCYBP24-201ENST00000420387 1106 ntBASIC3.61□□□□□ -1.83
SDC3O75056 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC3O75056 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC3O75056 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC3O75056 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SDC3O75056 AC084198.1-201ENST00000477747 402 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AC092451.1-201ENST00000480211 153 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AL358832.1-201ENST00000497800 389 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AC078918.1-201ENST00000498515 228 ntBASIC3.61□□□□□ -1.83
SDC3O75056 HSPD1P15-201ENST00000505573 1122 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AC005921.1-201ENST00000510589 286 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.61□□□□□ -1.83
SDC3O75056 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC3O75056 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC3O75056 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SDC3O75056 AL160281.1-201ENST00000605307 311 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 AP003392.5-201ENST00000607857 415 ntBASIC3.61□□□□□ -1.83
SDC3O75056 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 AC128687.2-201ENST00000609657 566 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AL049777.1-201ENST00000622740 518 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AC103798.2-201ENST00000624292 632 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AC244258.1-201ENST00000637553 1071 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AC139713.2-210ENST00000641741 992 ntBASIC3.61□□□□□ -1.83
SDC3O75056 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
SDC3O75056 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
SDC3O75056 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC3O75056 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 AL157700.1-201ENST00000561973 1432 ntBASIC3.61□□□□□ -1.83
SDC3O75056 AC032011.1-201ENST00000611703 1549 ntBASIC3.6□□□□□ -1.83
SDC3O75056 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.6□□□□□ -1.83
SDC3O75056 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
SDC3O75056 RNA5SP424-201ENST00000390988 115 ntBASIC3.6□□□□□ -1.83
SDC3O75056 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.6□□□□□ -1.83
SDC3O75056 BX842559.1-201ENST00000419615 532 ntBASIC3.6□□□□□ -1.83
SDC3O75056 PTP4A1P7-201ENST00000423476 514 ntBASIC3.6□□□□□ -1.83
SDC3O75056 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC3O75056 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.6□□□□□ -1.83
SDC3O75056 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC3O75056 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.6□□□□□ -1.83
SDC3O75056 BX510359.1-201ENST00000456973 237 ntBASIC3.6□□□□□ -1.83
SDC3O75056 NAP1L1P3-201ENST00000462291 880 ntBASIC3.6□□□□□ -1.83
SDC3O75056 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC3O75056 AC008427.1-201ENST00000503102 655 ntBASIC3.6□□□□□ -1.83
SDC3O75056 DSTNP2-201ENST00000504533 515 ntBASIC3.6□□□□□ -1.83
SDC3O75056 AC091860.1-201ENST00000505723 432 ntBASIC3.6□□□□□ -1.83
SDC3O75056 AC023141.12-201ENST00000512399 199 ntBASIC3.6□□□□□ -1.83
SDC3O75056 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.6□□□□□ -1.83
SDC3O75056 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC3O75056 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.6□□□□□ -1.83
SDC3O75056 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC3O75056 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SDC3O75056 OR4C2P-201ENST00000530855 1064 ntBASIC3.6□□□□□ -1.83
SDC3O75056 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC3O75056 NIFKP8-201ENST00000560500 874 ntBASIC3.6□□□□□ -1.83
SDC3O75056 AC090877.1-201ENST00000561418 344 ntBASIC3.6□□□□□ -1.83
SDC3O75056 AC090616.5-202ENST00000582111 297 ntBASIC3.6□□□□□ -1.83
SDC3O75056 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.6□□□□□ -1.83
SDC3O75056 AL136370.1-201ENST00000608166 691 ntBASIC3.6□□□□□ -1.83
SDC3O75056 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
SDC3O75056 AL512427.1-201ENST00000618593 349 ntBASIC3.6□□□□□ -1.83
SDC3O75056 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.6□□□□□ -1.83
SDC3O75056 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.6□□□□□ -1.83
SDC3O75056 MAPK10-373ENST00000641983 6772 ntBASIC3.6□□□□□ -1.83
SDC3O75056 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.6□□□□□ -1.83
SDC3O75056 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.6□□□□□ -1.83
SDC3O75056 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SDC3O75056 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.6□□□□□ -1.83
SDC3O75056 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.59□□□□□ -1.83
SDC3O75056 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SDC3O75056 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SDC3O75056 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
SDC3O75056 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.59□□□□□ -1.83
SDC3O75056 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SDC3O75056 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SDC3O75056 RNA5SP189-201ENST00000364920 115 ntBASIC3.59□□□□□ -1.83
SDC3O75056 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.59□□□□□ -1.83
SDC3O75056 RNU6-1226P-201ENST00000384317 107 ntBASIC3.59□□□□□ -1.83
SDC3O75056 MTCO2P31-201ENST00000402702 684 ntBASIC3.59□□□□□ -1.83
SDC3O75056 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.59□□□□□ -1.83
SDC3O75056 AC009237.5-201ENST00000414271 501 ntBASIC3.59□□□□□ -1.83
SDC3O75056 LIPT1P1-201ENST00000415870 1186 ntBASIC3.59□□□□□ -1.83
SDC3O75056 RPS3AP9-201ENST00000417027 792 ntBASIC3.59□□□□□ -1.83
SDC3O75056 AC244098.2-201ENST00000422068 99 ntBASIC3.59□□□□□ -1.83
SDC3O75056 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.59□□□□□ -1.83
SDC3O75056 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.59□□□□□ -1.83
SDC3O75056 AC096638.2-201ENST00000434965 711 ntBASIC3.59□□□□□ -1.83
SDC3O75056 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.59□□□□□ -1.83
SDC3O75056 NPM1P49-201ENST00000448027 714 ntBASIC3.59□□□□□ -1.83
SDC3O75056 HMGN3P1-201ENST00000453847 193 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms