Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL512347.1-201ENST00000566420 503 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC090751.1-201ENST00000566966 267 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC138915.2-201ENST00000569776 97 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 MTND1P15-201ENST00000579262 949 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 MIR4801-201ENST00000582704 82 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.77□□□□□ -1.81
LMX1BO60663 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.77□□□□□ -1.81
LMX1BO60663 MIR92B-201ENST00000607575 96 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AL357080.1-201ENST00000617394 239 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.77□□□□□ -1.81
LMX1BO60663 AC019278.1-201ENST00000623516 479 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 AC008785.1-201ENST00000624475 456 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 AC119744.1-201ENST00000454746 1715 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 AC046144.1-201ENST00000478559 1853 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.77□□□□□ -1.81
LMX1BO60663 AC125257.1-201ENST00000560400 2930 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 AL592182.3-201ENST00000642132 3304 ntBASIC3.77□□□□□ -1.81
LMX1BO60663 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LMX1BO60663 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
LMX1BO60663 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
LMX1BO60663 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
LMX1BO60663 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.76□□□□□ -1.81
LMX1BO60663 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
LMX1BO60663 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
LMX1BO60663 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.76□□□□□ -1.81
LMX1BO60663 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.76□□□□□ -1.81
LMX1BO60663 RNU6-1066P-201ENST00000363573 105 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 Y_RNA.302-201ENST00000364997 102 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AL133264.1-201ENST00000407157 562 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 RPL23AP26-201ENST00000412728 464 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 TMSB10P2-201ENST00000416049 131 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC073136.2-201ENST00000417282 849 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC009237.2-201ENST00000421358 284 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 BMS1P19-201ENST00000433925 393 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.76□□□□□ -1.81
LMX1BO60663 CBX1P4-201ENST00000439415 457 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AL592447.1-201ENST00000447592 540 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AL034418.1-201ENST00000448675 860 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 SNRPGP9-201ENST00000456025 225 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 RPL23AP71-201ENST00000470966 469 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 RN7SL809P-201ENST00000482040 297 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC108145.1-201ENST00000503770 153 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 SNX5P1-201ENST00000505757 1041 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 RPL37P25-201ENST00000507308 276 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC093281.2-201ENST00000510153 597 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.76□□□□□ -1.81
LMX1BO60663 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
LMX1BO60663 RNA5SP360-201ENST00000516555 118 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC018442.3-201ENST00000523025 183 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.76□□□□□ -1.81
LMX1BO60663 MED28P5-201ENST00000528254 438 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC090312.2-201ENST00000582687 378 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC3.76□□□□□ -1.81
LMX1BO60663 AC091946.2-201ENST00000606105 291 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC005332.6-201ENST00000613178 446 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC013476.2-201ENST00000614456 459 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AL023881.1-201ENST00000621088 301 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 AC124312.6-202ENST00000623624 418 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
LMX1BO60663 AC027514.1-201ENST00000588561 1603 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
LMX1BO60663 ZNF962P-201ENST00000443465 3140 ntBASIC3.76□□□□□ -1.81
LMX1BO60663 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.76□□□□□ -1.81
LMX1BO60663 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.76□□□□□ -1.81
LMX1BO60663 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
LMX1BO60663 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.75□□□□□ -1.81
LMX1BO60663 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
LMX1BO60663 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.75□□□□□ -1.81
LMX1BO60663 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.75□□□□□ -1.81
LMX1BO60663 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LMX1BO60663 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LMX1BO60663 Y_RNA.18-201ENST00000362461 102 ntBASIC3.75□□□□□ -1.81
LMX1BO60663 AL359837.1-201ENST00000381357 287 ntBASIC3.75□□□□□ -1.81
LMX1BO60663 RNU6-178P-201ENST00000384631 104 ntBASIC3.75□□□□□ -1.81
LMX1BO60663 RPL23AP29-201ENST00000397284 453 ntBASIC3.75□□□□□ -1.81
LMX1BO60663 AL590290.1-201ENST00000405336 380 ntBASIC3.75□□□□□ -1.81
LMX1BO60663 AL450338.1-201ENST00000407987 512 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms