Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PAICSP7-201ENST00000419829 962 ntBASIC3.36□□□□□ -1.87
LSM1O15116 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 AC004975.1-201ENST00000428733 208 ntBASIC3.36□□□□□ -1.87
LSM1O15116 BX679664.1-201ENST00000434429 253 ntBASIC3.36□□□□□ -1.87
LSM1O15116 RSL24D1P8-201ENST00000434442 492 ntBASIC3.36□□□□□ -1.87
LSM1O15116 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 RNFT1P2-201ENST00000443064 757 ntBASIC3.36□□□□□ -1.87
LSM1O15116 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 SSXP4-201ENST00000451349 245 ntBASIC3.36□□□□□ -1.87
LSM1O15116 RPS24P6-201ENST00000452670 400 ntBASIC3.36□□□□□ -1.87
LSM1O15116 NUTF2P7-201ENST00000453086 375 ntBASIC3.36□□□□□ -1.87
LSM1O15116 BX248409.1-201ENST00000455497 255 ntBASIC3.36□□□□□ -1.87
LSM1O15116 RPL5P24-201ENST00000463742 885 ntBASIC3.36□□□□□ -1.87
LSM1O15116 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.36□□□□□ -1.87
LSM1O15116 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 SNORA70.18-201ENST00000516696 98 ntBASIC3.36□□□□□ -1.87
LSM1O15116 SNORA70.19-201ENST00000516717 90 ntBASIC3.36□□□□□ -1.87
LSM1O15116 MIR2276-201ENST00000516886 89 ntBASIC3.36□□□□□ -1.87
LSM1O15116 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.36□□□□□ -1.87
LSM1O15116 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 AC107954.1-201ENST00000565906 727 ntBASIC3.36□□□□□ -1.87
LSM1O15116 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC3.36□□□□□ -1.87
LSM1O15116 AC107982.3-201ENST00000584957 985 ntBASIC3.36□□□□□ -1.87
LSM1O15116 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.36□□□□□ -1.87
LSM1O15116 KATNBL1P5-201ENST00000605015 517 ntBASIC3.36□□□□□ -1.87
LSM1O15116 AC096586.1-201ENST00000610267 561 ntBASIC3.36□□□□□ -1.87
LSM1O15116 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.36□□□□□ -1.87
LSM1O15116 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LSM1O15116 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LSM1O15116 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LSM1O15116 MTND4P21-201ENST00000453886 1357 ntBASIC3.36□□□□□ -1.87
LSM1O15116 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
LSM1O15116 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LSM1O15116 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.35□□□□□ -1.87
LSM1O15116 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LSM1O15116 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LSM1O15116 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LSM1O15116 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
LSM1O15116 RNA5SP383-201ENST00000362934 120 ntBASIC3.35□□□□□ -1.87
LSM1O15116 SNORD3H-201ENST00000384486 214 ntBASIC3.35□□□□□ -1.87
LSM1O15116 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LSM1O15116 RNA5SP56-201ENST00000410277 118 ntBASIC3.35□□□□□ -1.87
LSM1O15116 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.35□□□□□ -1.87
LSM1O15116 AC245291.1-201ENST00000419501 328 ntBASIC3.35□□□□□ -1.87
LSM1O15116 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.35□□□□□ -1.87
LSM1O15116 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.35□□□□□ -1.87
LSM1O15116 AC010881.1-201ENST00000433830 235 ntBASIC3.35□□□□□ -1.87
LSM1O15116 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.35□□□□□ -1.87
LSM1O15116 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.35□□□□□ -1.87
LSM1O15116 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.35□□□□□ -1.87
LSM1O15116 NECAP1P2-201ENST00000455668 727 ntBASIC3.35□□□□□ -1.87
LSM1O15116 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LSM1O15116 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.35□□□□□ -1.87
LSM1O15116 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC3.35□□□□□ -1.87
LSM1O15116 AC092593.2-201ENST00000513866 913 ntBASIC3.35□□□□□ -1.87
LSM1O15116 AC104057.1-201ENST00000515547 497 ntBASIC3.35□□□□□ -1.87
LSM1O15116 HIGD1AP6-201ENST00000521833 279 ntBASIC3.35□□□□□ -1.87
LSM1O15116 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.35□□□□□ -1.87
LSM1O15116 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.35□□□□□ -1.87
LSM1O15116 AC007536.1-201ENST00000533382 349 ntBASIC3.35□□□□□ -1.87
LSM1O15116 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC3.35□□□□□ -1.87
LSM1O15116 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.35□□□□□ -1.87
LSM1O15116 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.35□□□□□ -1.87
LSM1O15116 AC067959.1-201ENST00000604334 379 ntBASIC3.35□□□□□ -1.87
LSM1O15116 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC3.35□□□□□ -1.87
LSM1O15116 AL590240.3-201ENST00000621416 943 ntBASIC3.35□□□□□ -1.87
LSM1O15116 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LSM1O15116 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.35□□□□□ -1.87
LSM1O15116 AC008264.2-201ENST00000610193 3731 ntBASIC3.35□□□□□ -1.87
LSM1O15116 AC025263.3-201ENST00000622965 1396 ntBASIC3.35□□□□□ -1.87
LSM1O15116 AC103988.1-201ENST00000566382 2177 ntBASIC3.35□□□□□ -1.87
LSM1O15116 AF117829.1-206ENST00000621883 3802 ntBASIC3.35□□□□□ -1.87
LSM1O15116 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LSM1O15116 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LSM1O15116 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
LSM1O15116 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
LSM1O15116 AP001350.1-201ENST00000601906 1524 ntBASIC3.34□□□□□ -1.87
LSM1O15116 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.34□□□□□ -1.87
LSM1O15116 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.34□□□□□ -1.87
LSM1O15116 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
LSM1O15116 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.34□□□□□ -1.87
LSM1O15116 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LSM1O15116 MIR148B-201ENST00000362252 99 ntBASIC3.34□□□□□ -1.87
LSM1O15116 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
LSM1O15116 RNU6-1226P-201ENST00000384317 107 ntBASIC3.34□□□□□ -1.87
LSM1O15116 FABP12P1-201ENST00000401911 322 ntBASIC3.34□□□□□ -1.87
LSM1O15116 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.34□□□□□ -1.87
LSM1O15116 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.34□□□□□ -1.87
LSM1O15116 RNA5SP31-201ENST00000411144 127 ntBASIC3.34□□□□□ -1.87
LSM1O15116 HMGB3P23-201ENST00000414981 585 ntBASIC3.34□□□□□ -1.87
LSM1O15116 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.34□□□□□ -1.87
LSM1O15116 VN1R42P-201ENST00000424651 344 ntBASIC3.34□□□□□ -1.87
LSM1O15116 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.34□□□□□ -1.87
LSM1O15116 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.34□□□□□ -1.87
LSM1O15116 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.34□□□□□ -1.87
LSM1O15116 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 158.8 ms