Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 RNU6-1322P-201ENST00000364309 107 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 RNA5SP90-201ENST00000364801 99 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 RNU6-505P-201ENST00000384427 107 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 MIR568-201ENST00000385036 95 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC113618.1-201ENST00000416747 285 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AL445669.1-201ENST00000426743 755 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 Z93242.1-201ENST00000427102 353 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC005033.1-201ENST00000428904 813 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 RPL7L1P9-201ENST00000431298 745 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 GTF2IP13-201ENST00000438487 386 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 RPS29P10-201ENST00000439197 166 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 SEPT14P3-201ENST00000439401 183 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 HSPE1P28-201ENST00000443139 211 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AL732372.2-207ENST00000445840 183 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 SEPT14P2-201ENST00000453405 183 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AL445433.1-201ENST00000457507 257 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 RPS4XP20-201ENST00000505751 772 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 SEPT14P4-201ENST00000513445 186 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC027308.1-201ENST00000517993 110 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 IGLVIV-64-201ENST00000518581 301 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 FO082796.1-201ENST00000523795 183 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 OR5BN1P-201ENST00000532955 829 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 MIR3682-201ENST00000581338 84 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 MIR4310-201ENST00000582950 57 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC069307.1-201ENST00000602820 447 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AL109918.3-201ENST00000603072 338 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 RNF138P2-201ENST00000603490 592 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC011816.2-201ENST00000607089 556 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC090948.1-201ENST00000607464 549 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 SNORD91B-202ENST00000608459 222 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC118658.2-201ENST00000618697 459 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC009248.2-201ENST00000619826 254 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC009268.2-201ENST00000621925 457 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AC135068.12-201ENST00000637370 931 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 AL049767.1-202ENST00000637826 242 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 SAMMSON-213ENST00000641336 1521 ntBASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC39Q9UFE4 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 U8.3-201ENST00000363321 132 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 RNU6-639P-201ENST00000384074 107 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 Y_RNA.452-201ENST00000384202 108 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 RNU6-1300P-201ENST00000391046 108 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 RNU6-77P-201ENST00000410554 91 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC245054.2-201ENST00000415639 319 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 MTCYBP8-201ENST00000422855 651 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC132479.1-201ENST00000449160 144 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC108161.1-201ENST00000461060 402 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 RPL7P39-201ENST00000481157 744 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC090686.1-201ENST00000481577 749 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC073073.1-201ENST00000493920 463 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 RNA5SP249-201ENST00000516127 99 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 IGKV3D-34-201ENST00000522638 302 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 PHBP17-201ENST00000528576 541 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC090022.1-201ENST00000546569 311 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC100810.6-201ENST00000638068 285 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 AC024560.2-201ENST00000507981 1497 ntBASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC39Q9UFE4 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 164.2 ms