Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC114973.1-201ENST00000429057 632 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 ATP5JP1-201ENST00000431631 322 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 PTGES3P1-201ENST00000439531 483 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 RNF2P1-201ENST00000442955 1010 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 MRPL42P4-201ENST00000453267 443 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC006499.5-201ENST00000505037 514 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 RNU6-1028P-201ENST00000517164 93 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 NARSP2-201ENST00000518524 679 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC090281.1-201ENST00000523019 276 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 NDUFS5P6-201ENST00000529136 295 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 OR5AP1P-201ENST00000529730 940 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 OR4C2P-201ENST00000530855 1064 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 CCNG2P1-201ENST00000549521 1000 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AL583856.2-201ENST00000606298 543 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 U4.6-201ENST00000621618 127 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC243312.2-201ENST00000623340 601 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC103798.2-201ENST00000624292 632 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC073073.2-201ENST00000609827 2578 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AL365440.1-201ENST00000436135 2167 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AL355578.1-201ENST00000607405 1328 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 DBF4P1-201ENST00000412976 1892 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC117529.2-201ENST00000512159 2068 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 ANKRD36P1-201ENST00000344424 659 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 RNU6-582P-201ENST00000362989 107 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 RNU6-839P-201ENST00000363347 108 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 RNU6-298P-201ENST00000390888 96 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 RPS7P9-201ENST00000414704 586 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 RAC1P3-201ENST00000416129 580 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 USP9YP21-201ENST00000420603 432 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 BMS1P19-201ENST00000433925 393 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 VN1R34P-201ENST00000447387 883 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 NPM1P13-201ENST00000452663 865 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 ANP32BP2-201ENST00000454525 545 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 RNU6-885P-201ENST00000516607 104 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AP006245.1-201ENST00000522549 120 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 MTCO3P15-201ENST00000526563 574 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 OR4A45P-201ENST00000529954 901 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AC103843.2-201ENST00000530523 682 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 OR5B10P-201ENST00000532869 642 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AC135001.1-201ENST00000544546 283 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AC092470.1-201ENST00000546187 132 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AC107016.1-201ENST00000550463 337 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AC068790.5-201ENST00000602741 355 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AP003973.1-201ENST00000604639 691 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AC018754.1-201ENST00000607486 925 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AL392048.1-201ENST00000613946 534 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 C2orf27A-204ENST00000623058 969 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AL392088.2-201ENST00000637607 285 ntBASIC3.59□□□□□ -1.83
LHX3Q9UBR4 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.59□□□□□ -1.83
LHX3Q9UBR4 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
LHX3Q9UBR4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.58□□□□□ -1.84
LHX3Q9UBR4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms