Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC090312.1-201ENST00000580637 348 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 BNIP3P8-201ENST00000597863 560 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC112191.3-201ENST00000604371 277 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AL590392.1-201ENST00000604960 446 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC098614.4-201ENST00000607601 462 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC080013.4-201ENST00000607624 649 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC131902.3-201ENST00000611767 581 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 MLECP1-201ENST00000615893 709 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC095031.1-201ENST00000623685 672 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 MIR6830-201ENST00000636015 70 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC021242.1-201ENST00000507315 2035 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC093536.2-201ENST00000565257 1406 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AL451142.2-201ENST00000429076 2090 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC011978.2-201ENST00000569835 2054 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC015813.6-201ENST00000624409 5808 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC021146.4-201ENST00000309229 279 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 RNU6-343P-201ENST00000364709 104 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 RNU6-533P-201ENST00000384144 107 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 RGS17P1-201ENST00000423358 553 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 RSL24D1P6-201ENST00000426934 401 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 MTATP6P13-201ENST00000438531 667 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC002381.1-201ENST00000447049 280 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 NANOGNBP1-201ENST00000448444 480 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AL590365.1-201ENST00000450788 243 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 SCARNA10-201ENST00000459255 330 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AL672167.3-201ENST00000465951 960 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC015795.1-201ENST00000513669 327 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC108064.1-201ENST00000513791 460 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 RN7SKP122-201ENST00000515923 296 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC022861.1-201ENST00000522981 663 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 TOMM20P2-201ENST00000540082 421 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC068831.4-201ENST00000556118 109 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 ATP5J2P6-201ENST00000565203 266 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 MIR4716-201ENST00000579628 84 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AC026368.1-201ENST00000614934 690 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 AL445264.1-201ENST00000621719 171 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 CYP3A51P-201ENST00000633513 256 ntBASIC4.81□□□□□ -1.64
TDP1Q9NUW8 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.81□□□□□ -1.64
TDP1Q9NUW8 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 Y_RNA.582-201ENST00000391023 95 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AP000580.1-201ENST00000404439 358 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 RNU6ATAC25P-201ENST00000408798 117 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 RN7SKP247-201ENST00000411094 308 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 Z97055.1-201ENST00000419730 712 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AL590609.2-201ENST00000421430 368 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 MTCYBP5-201ENST00000423752 1135 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 OR4F13P-201ENST00000428478 931 ntBASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.8□□□□□ -1.64
TDP1Q9NUW8 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 130 ms