Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SNHG22-203ENST00000617833 660 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC132068.1-201ENST00000623805 459 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.43
TRAIPQ9BWF2 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC239868.2-201ENST00000564237 4527 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 MIR133A2-201ENST00000347538 102 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 RNA5SP319-201ENST00000362768 119 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 RNU6-1284P-201ENST00000363701 100 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 RNU6-534P-201ENST00000364877 106 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 OR2AS1P-201ENST00000427827 319 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 SNRPGP6-201ENST00000451124 220 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC004453.1-201ENST00000487895 408 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 UBE2Q2P9-201ENST00000490086 202 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC117522.1-201ENST00000509821 380 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 RNU6-390P-201ENST00000516259 103 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 MGST1-215ENST00000540056 546 ntTSL 3 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 LSM3P2-201ENST00000551246 273 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC125611.2-201ENST00000551907 647 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 MIR4311-201ENST00000580794 100 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 CDC42EP3P1-201ENST00000601004 764 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC130324.3-201ENST00000614165 542 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AL450472.3-201ENST00000615578 367 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC079776.5-201ENST00000641920 211 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 AC025031.4-201ENST00000621248 3271 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 CROT-204ENST00000442291 1993 ntTSL 5 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 EEF1A1P42-201ENST00000613436 1331 ntBASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRAIPQ9BWF2 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AC026523.2-201ENST00000625039 7739 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 RNU6-173P-201ENST00000364215 104 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 RNU6-867P-201ENST00000364956 107 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 RNA5SP235-201ENST00000365411 114 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 RNU6-1181P-201ENST00000384191 106 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 RNU6-39P-201ENST00000384344 107 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 RNU2-39P-201ENST00000410604 198 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 RN7SKP279-201ENST00000411383 298 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AMD1P2-201ENST00000412936 992 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AL606489.2-201ENST00000433886 234 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 CALM1P1-201ENST00000442082 433 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 CBX1P2-201ENST00000453841 458 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AC006512.1-201ENST00000468816 291 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 RN7SL727P-201ENST00000482164 296 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AC024558.1-201ENST00000505008 528 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 MLLT10P2-201ENST00000506434 249 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AC074344.1-201ENST00000512823 224 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 RNU6-840P-201ENST00000517275 65 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 IGLV2-28-201ENST00000520681 304 ntBASIC6.13□□□□□ -1.43
TRAIPQ9BWF2 AC100870.1-201ENST00000522035 505 ntBASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 299.8 ms