Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.88□□□□□ -1.95
FOXA1P55317 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA1P55317 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA1P55317 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA1P55317 MFF-206ENST00000392059 1710 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA1P55317 AC096656.1-201ENST00000623826 1364 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 AF127577.6-201ENST00000623352 2191 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA1P55317 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA1P55317 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA1P55317 AL035425.3-201ENST00000564206 4996 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
FOXA1P55317 RNA5SP267-201ENST00000364893 126 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 AC083799.1-201ENST00000366451 910 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 RPL17P50-201ENST00000396131 546 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 RNU2-37P-201ENST00000410695 177 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA1P55317 HSD52-202ENST00000436225 772 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA1P55317 AL591503.2-201ENST00000442314 1005 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA1P55317 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA1P55317 RPL21P18-201ENST00000469899 480 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 RPS29P2-201ENST00000479278 136 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 AC011037.1-201ENST00000483964 558 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 RN7SL504P-201ENST00000494496 287 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 HMGB1P3-201ENST00000502802 616 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 WBP1LP4-201ENST00000505043 344 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 AC093770.1-201ENST00000511559 571 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 AC108120.2-201ENST00000512973 294 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA1P55317 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA1P55317 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA1P55317 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC2.87□□□□□ -1.95
FOXA1P55317 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA1P55317 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA1P55317 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC2.87□□□□□ -1.95
FOXA1P55317 CSNK1A1P1-202ENST00000563423 981 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.87□□□□□ -1.95
FOXA1P55317 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA1P55317 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC2.87□□□□□ -1.95
FOXA1P55317 AC012119.1-201ENST00000603184 222 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA1P55317 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA1P55317 AC009032.1-201ENST00000617574 431 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA1P55317 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC2.87□□□□□ -1.95
FOXA1P55317 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA1P55317 AC017002.4-201ENST00000604721 1525 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.87□□□□□ -1.95
FOXA1P55317 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
FOXA1P55317 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA1P55317 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA1P55317 GABPAP-201ENST00000419271 1356 ntBASIC2.87□□□□□ -1.95
FOXA1P55317 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
FOXA1P55317 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA1P55317 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA1P55317 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA1P55317 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
FOXA1P55317 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA1P55317 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA1P55317 AP003122.5-201ENST00000527668 3766 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.86□□□□□ -1.95
FOXA1P55317 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
FOXA1P55317 SNORA51.4-201ENST00000364993 124 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA1P55317 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA1P55317 MIR34B-201ENST00000385076 84 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.86□□□□□ -1.95
FOXA1P55317 RNA5SP120-201ENST00000410900 112 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 RN7SKP58-201ENST00000411010 305 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 AL451074.5-201ENST00000415894 435 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 DUTP6-201ENST00000425573 462 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.86□□□□□ -1.95
FOXA1P55317 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA1P55317 AC090543.1-201ENST00000492168 485 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 AC012170.1-201ENST00000495139 359 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 PRELID3BP6-201ENST00000503839 571 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC2.86□□□□□ -1.95
FOXA1P55317 RNU6-760P-201ENST00000516078 97 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 Vault.1-201ENST00000516474 102 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 RNU6-1004P-201ENST00000516584 111 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 RNU6-889P-201ENST00000517189 103 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA1P55317 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA1P55317 OR5D17P-201ENST00000531492 978 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA1P55317 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA1P55317 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
FOXA1P55317 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA1P55317 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.86□□□□□ -1.95
FOXA1P55317 AC015871.2-201ENST00000603605 948 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 AL020991.1-201ENST00000612314 373 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
FOXA1P55317 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC2.86□□□□□ -1.95
FOXA1P55317 SNORA50A-202ENST00000629536 136 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
FOXA1P55317 GABRG2-229ENST00000641017 3628 ntBASIC2.86□□□□□ -1.95
FOXA1P55317 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms