Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MTND4P9-201ENST00000507819 1346 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A4P53420 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
COL4A4P53420 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A4P53420 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A4P53420 AC009313.2-201ENST00000417893 1941 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
COL4A4P53420 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
COL4A4P53420 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A4P53420 RNY3P9-201ENST00000384727 106 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 SKINT1L-201ENST00000401057 817 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 AL592148.1-201ENST00000413568 445 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.31□□□□□ -1.88
COL4A4P53420 AL035407.1-201ENST00000429211 571 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 USP9YP28-201ENST00000435142 589 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 MTCO3P43-201ENST00000440974 771 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 AC092685.1-201ENST00000447960 1243 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A4P53420 MTCO3P28-201ENST00000513351 515 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 RNA5SP367-201ENST00000516557 118 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.31□□□□□ -1.88
COL4A4P53420 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A4P53420 AC005951.1-201ENST00000576706 485 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A4P53420 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.31□□□□□ -1.88
COL4A4P53420 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC3.31□□□□□ -1.88
COL4A4P53420 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
COL4A4P53420 AC146944.4-201ENST00000602697 718 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 AC034236.3-201ENST00000605999 461 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 AC087241.4-201ENST00000612441 480 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 LINC00901.1-201ENST00000617252 152 ntBASIC3.31□□□□□ -1.88
COL4A4P53420 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A4P53420 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A4P53420 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A4P53420 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A4P53420 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
COL4A4P53420 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A4P53420 AL353692.2-201ENST00000407054 335 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A4P53420 RPL31P12-201ENST00000422587 358 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A4P53420 MTND4LP7-201ENST00000431728 294 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 RPL21P112-201ENST00000434403 463 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 CST9LP2-201ENST00000437612 320 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A4P53420 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A4P53420 Z83846.1-201ENST00000446798 265 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 NPM1P13-201ENST00000452663 865 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A4P53420 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A4P53420 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A4P53420 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A4P53420 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A4P53420 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.3□□□□□ -1.88
COL4A4P53420 AC015849.2-201ENST00000605738 409 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AL512506.1-201ENST00000613918 449 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC008121.2-201ENST00000614647 523 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC099506.2-201ENST00000623074 221 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A4P53420 AC068137.4-201ENST00000638485 296 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A4P53420 AC090971.4-201ENST00000560291 1800 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
COL4A4P53420 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A4P53420 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
COL4A4P53420 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A4P53420 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
COL4A4P53420 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A4P53420 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AL445529.1-201ENST00000398713 389 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A4P53420 AL590623.1-201ENST00000427864 105 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A4P53420 RPL7P36-201ENST00000444633 681 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A4P53420 HMGN1P18-201ENST00000457642 277 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AP002884.2-201ENST00000471647 395 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC117440.1-201ENST00000474107 571 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 FAM172BP-201ENST00000487497 1089 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A4P53420 AC117525.1-201ENST00000515228 503 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 RNU6ATAC39P-201ENST00000516309 149 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 Y_RNA.717-201ENST00000517106 92 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A4P53420 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.3□□□□□ -1.88
COL4A4P53420 OR8K4P-201ENST00000534608 872 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A4P53420 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.3□□□□□ -1.88
COL4A4P53420 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A4P53420 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A4P53420 AC097504.2-201ENST00000608088 454 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC004832.5-201ENST00000608677 401 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC018645.2-201ENST00000609151 472 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 CR589904.2-201ENST00000612533 440 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 CYCSP41-201ENST00000616920 296 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC3.3□□□□□ -1.88
COL4A4P53420 AC019226.2-201ENST00000625973 424 ntBASIC3.3□□□□□ -1.88
COL4A4P53420 AC010149.2-201ENST00000637608 315 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms