Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RN7SKP275-201ENST00000364626 301 ntBASIC5.81□□□□□ -1.48
MSX1P28360 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
MSX1P28360 Y_RNA.399-201ENST00000383955 105 ntBASIC5.81□□□□□ -1.48
MSX1P28360 Y_RNA.483-201ENST00000384380 101 ntBASIC5.81□□□□□ -1.48
MSX1P28360 Y_RNA.562-201ENST00000384695 113 ntBASIC5.81□□□□□ -1.48
MSX1P28360 RNU6-95P-201ENST00000384697 107 ntBASIC5.81□□□□□ -1.48
MSX1P28360 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
MSX1P28360 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX1P28360 U3.43-201ENST00000410734 213 ntBASIC5.81□□□□□ -1.48
MSX1P28360 DPPA2P2-201ENST00000418220 897 ntBASIC5.81□□□□□ -1.48
MSX1P28360 AC234779.1-201ENST00000425910 285 ntBASIC5.81□□□□□ -1.48
MSX1P28360 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.81□□□□□ -1.48
MSX1P28360 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.81□□□□□ -1.48
MSX1P28360 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX1P28360 USP9YP30-201ENST00000430729 455 ntBASIC5.81□□□□□ -1.48
MSX1P28360 RPL5P7-201ENST00000444235 813 ntBASIC5.81□□□□□ -1.48
MSX1P28360 COX4I1P2-201ENST00000447446 547 ntBASIC5.81□□□□□ -1.48
MSX1P28360 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX1P28360 RPL21P6-201ENST00000479171 504 ntBASIC5.81□□□□□ -1.48
MSX1P28360 RN7SL714P-201ENST00000487050 298 ntBASIC5.81□□□□□ -1.48
MSX1P28360 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX1P28360 RNU6-138P-201ENST00000515952 107 ntBASIC5.81□□□□□ -1.48
MSX1P28360 RNU6-685P-201ENST00000517088 95 ntBASIC5.81□□□□□ -1.48
MSX1P28360 RNU6-64P-201ENST00000517119 105 ntBASIC5.81□□□□□ -1.48
MSX1P28360 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX1P28360 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX1P28360 RANP3-201ENST00000530970 276 ntBASIC5.81□□□□□ -1.48
MSX1P28360 AP003385.6-201ENST00000531603 374 ntBASIC5.81□□□□□ -1.48
MSX1P28360 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX1P28360 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX1P28360 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.81□□□□□ -1.48
MSX1P28360 AL121576.1-201ENST00000556055 276 ntBASIC5.81□□□□□ -1.48
MSX1P28360 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.81□□□□□ -1.48
MSX1P28360 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX1P28360 AC073046.2-201ENST00000604756 527 ntBASIC5.81□□□□□ -1.48
MSX1P28360 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX1P28360 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX1P28360 AL590099.1-201ENST00000615276 138 ntBASIC5.81□□□□□ -1.48
MSX1P28360 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.81□□□□□ -1.48
MSX1P28360 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX1P28360 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX1P28360 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX1P28360 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX1P28360 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX1P28360 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX1P28360 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX1P28360 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.81□□□□□ -1.48
MSX1P28360 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX1P28360 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 Z95327.2-201ENST00000414579 1873 ntBASIC5.8□□□□□ -1.48
MSX1P28360 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 OR10R3P-201ENST00000361688 942 ntBASIC5.8□□□□□ -1.48
MSX1P28360 Y_RNA.276-201ENST00000364732 109 ntBASIC5.8□□□□□ -1.48
MSX1P28360 Y_RNA.477-201ENST00000384352 108 ntBASIC5.8□□□□□ -1.48
MSX1P28360 SNORD70.1-201ENST00000391007 85 ntBASIC5.8□□□□□ -1.48
MSX1P28360 MTCO2P33-201ENST00000402100 465 ntBASIC5.8□□□□□ -1.48
MSX1P28360 AC011933.1-201ENST00000413334 321 ntBASIC5.8□□□□□ -1.48
MSX1P28360 OR6E1P-201ENST00000414424 923 ntBASIC5.8□□□□□ -1.48
MSX1P28360 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 MRPS18CP6-201ENST00000423587 223 ntBASIC5.8□□□□□ -1.48
MSX1P28360 RPSAP65-201ENST00000429660 595 ntBASIC5.8□□□□□ -1.48
MSX1P28360 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX1P28360 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX1P28360 RPL36AP13-201ENST00000457490 317 ntBASIC5.8□□□□□ -1.48
MSX1P28360 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX1P28360 RNU7-167P-201ENST00000459160 62 ntBASIC5.8□□□□□ -1.48
MSX1P28360 RPL39P38-201ENST00000467018 153 ntBASIC5.8□□□□□ -1.48
MSX1P28360 RPL7P51-201ENST00000490532 749 ntBASIC5.8□□□□□ -1.48
MSX1P28360 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX1P28360 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX1P28360 MYL2-203ENST00000548438 664 ntTSL 3 BASIC5.8□□□□□ -1.48
MSX1P28360 RPA2P1-201ENST00000556557 721 ntBASIC5.8□□□□□ -1.48
MSX1P28360 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 AC124916.2-201ENST00000604416 224 ntBASIC5.8□□□□□ -1.48
MSX1P28360 MTND4LP5-201ENST00000605152 292 ntBASIC5.8□□□□□ -1.48
MSX1P28360 AC009570.1-201ENST00000609599 745 ntBASIC5.8□□□□□ -1.48
MSX1P28360 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX1P28360 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX1P28360 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX1P28360 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.8□□□□□ -1.48
MSX1P28360 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
MSX1P28360 PWAR1-201ENST00000624188 2414 ntBASIC5.8□□□□□ -1.48
MSX1P28360 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.8□□□□□ -1.48
MSX1P28360 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.8□□□□□ -1.48
MSX1P28360 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSX1P28360 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms