Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC3.38□□□□□ -1.87
COL5A3P25940 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
COL5A3P25940 MIR592-201ENST00000384959 97 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 RN7SKP285-201ENST00000410137 318 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 RNA5SP508-201ENST00000411327 119 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.37□□□□□ -1.87
COL5A3P25940 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.37□□□□□ -1.87
COL5A3P25940 AC233981.1-201ENST00000423224 461 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL5A3P25940 AC018797.3-201ENST00000513388 1241 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 SNORD53-201ENST00000579969 78 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 MIR4635-201ENST00000583759 79 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC3.37□□□□□ -1.87
COL5A3P25940 AC007621.1-201ENST00000604544 437 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 AC016717.2-201ENST00000609089 5141 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 LINC01355-201ENST00000566551 5444 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 MTND4P10-201ENST00000446199 1363 ntBASIC3.37□□□□□ -1.87
COL5A3P25940 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
COL5A3P25940 AC009313.2-201ENST00000417893 1941 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 RNA5SP107-201ENST00000411358 122 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 AMD1P2-201ENST00000412936 992 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 TRGV5P-201ENST00000419915 354 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 RPL21P41-201ENST00000459863 264 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 AP002884.2-201ENST00000471647 395 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 PRELID3BP7-201ENST00000503606 469 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL5A3P25940 AC008121.2-201ENST00000614647 523 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 XKRY2-202ENST00000623874 1581 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 XKRY-202ENST00000624960 1581 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.36□□□□□ -1.87
COL5A3P25940 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL5A3P25940 SMC4P1-201ENST00000414479 527 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.36□□□□□ -1.87
COL5A3P25940 FCF1P1-201ENST00000432690 571 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC3.36□□□□□ -1.87
COL5A3P25940 snoU13.15-201ENST00000459407 104 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 snoU13.26-201ENST00000459452 105 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 AC006445.2-201ENST00000510061 472 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 AL391156.1-201ENST00000554965 554 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 ATP5F1P7-201ENST00000567330 760 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 ZNF861P-201ENST00000588126 639 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 U7.8-201ENST00000619968 63 ntBASIC3.36□□□□□ -1.87
COL5A3P25940 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.36□□□□□ -1.87
COL5A3P25940 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.35□□□□□ -1.87
COL5A3P25940 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL5A3P25940 AL365361.1-201ENST00000566942 3481 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 RNU6-805P-201ENST00000365643 106 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 RPL21P3-201ENST00000395517 478 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL5A3P25940 BTF3P7-201ENST00000407097 488 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 XIST-201ENST00000416330 750 ntTSL 2 BASIC3.35□□□□□ -1.87
COL5A3P25940 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.35□□□□□ -1.87
COL5A3P25940 AL049610.1-201ENST00000423374 372 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 AC146507.2-201ENST00000460608 476 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 RN7SL75P-201ENST00000461926 281 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.35□□□□□ -1.87
COL5A3P25940 RNU6-84P-201ENST00000607737 102 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.35□□□□□ -1.87
COL5A3P25940 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.35□□□□□ -1.87
COL5A3P25940 AC025034.2-201ENST00000623264 286 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.35□□□□□ -1.87
COL5A3P25940 AC093831.2-201ENST00000624393 3427 ntBASIC3.35□□□□□ -1.87
COL5A3P25940 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.34□□□□□ -1.87
COL5A3P25940 AC092881.1-201ENST00000638218 2733 ntBASIC3.34□□□□□ -1.87
COL5A3P25940 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL5A3P25940 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL5A3P25940 AC004972.1-201ENST00000623934 2209 ntBASIC3.34□□□□□ -1.87
COL5A3P25940 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL5A3P25940 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL5A3P25940 SNORA3.2-201ENST00000408221 125 ntBASIC3.34□□□□□ -1.87
COL5A3P25940 AC245166.1-201ENST00000521012 253 ntBASIC3.34□□□□□ -1.87
COL5A3P25940 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.34□□□□□ -1.87
COL5A3P25940 AC005046.1-201ENST00000608515 625 ntBASIC3.34□□□□□ -1.87
COL5A3P25940 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.34□□□□□ -1.87
COL5A3P25940 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL5A3P25940 AC109315.1-201ENST00000584143 1347 ntBASIC3.34□□□□□ -1.88
COL5A3P25940 PWAR6-201ENST00000552334 4618 ntBASIC3.34□□□□□ -1.88
COL5A3P25940 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL5A3P25940 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL5A3P25940 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.33□□□□□ -1.88
COL5A3P25940 U8.2-201ENST00000363156 134 ntBASIC3.33□□□□□ -1.88
COL5A3P25940 RNU6-304P-201ENST00000364855 107 ntBASIC3.33□□□□□ -1.88
COL5A3P25940 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.33□□□□□ -1.88
COL5A3P25940 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
COL5A3P25940 RNA5SP425-201ENST00000410336 112 ntBASIC3.33□□□□□ -1.88
COL5A3P25940 SRIP2-201ENST00000428470 166 ntBASIC3.33□□□□□ -1.88
COL5A3P25940 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.33□□□□□ -1.88
COL5A3P25940 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.33□□□□□ -1.88
COL5A3P25940 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.33□□□□□ -1.88
COL5A3P25940 AC122134.1-201ENST00000565664 1104 ntBASIC3.33□□□□□ -1.88
COL5A3P25940 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.33□□□□□ -1.88
COL5A3P25940 AC090115.4-201ENST00000609970 188 ntBASIC3.33□□□□□ -1.88
COL5A3P25940 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL5A3P25940 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL5A3P25940 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
COL5A3P25940 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL5A3P25940 AC005189.1-201ENST00000431286 310 ntBASIC3.33□□□□□ -1.88
COL5A3P25940 OR9N1P-201ENST00000491296 333 ntBASIC3.33□□□□□ -1.88
COL5A3P25940 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.33□□□□□ -1.88
COL5A3P25940 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms