Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC114546.3-201ENST00000623582 1734 ntBASIC5.99□□□□□ -1.45
LIG1P18858 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG1P18858 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LIG1P18858 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.99□□□□□ -1.45
LIG1P18858 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
LIG1P18858 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
LIG1P18858 RNU6-657P-201ENST00000383904 107 ntBASIC5.99□□□□□ -1.45
LIG1P18858 Y_RNA.394-201ENST00000383942 103 ntBASIC5.99□□□□□ -1.45
LIG1P18858 Y_RNA.431-201ENST00000384086 102 ntBASIC5.99□□□□□ -1.45
LIG1P18858 RPS20P2-201ENST00000402520 389 ntBASIC5.99□□□□□ -1.45
LIG1P18858 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.99□□□□□ -1.45
LIG1P18858 RNA5SP487-201ENST00000410186 122 ntBASIC5.99□□□□□ -1.45
LIG1P18858 CTSL3P-202ENST00000412179 788 ntBASIC5.99□□□□□ -1.45
LIG1P18858 OR9R1P-201ENST00000412200 877 ntBASIC5.99□□□□□ -1.45
LIG1P18858 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.99□□□□□ -1.45
LIG1P18858 OR51AB1P-201ENST00000429046 620 ntBASIC5.99□□□□□ -1.45
LIG1P18858 RSU1P2-202ENST00000437884 485 ntBASIC5.99□□□□□ -1.45
LIG1P18858 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG1P18858 AC104634.1-201ENST00000452720 462 ntBASIC5.99□□□□□ -1.45
LIG1P18858 RNU7-136P-201ENST00000458819 69 ntBASIC5.99□□□□□ -1.45
LIG1P18858 AC083798.1-201ENST00000472671 131 ntBASIC5.99□□□□□ -1.45
LIG1P18858 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.99□□□□□ -1.45
LIG1P18858 RN7SL177P-201ENST00000476596 299 ntBASIC5.99□□□□□ -1.45
LIG1P18858 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.99□□□□□ -1.45
LIG1P18858 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG1P18858 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG1P18858 RNU6-1045P-201ENST00000516321 107 ntBASIC5.99□□□□□ -1.45
LIG1P18858 RNU6-347P-201ENST00000516658 105 ntBASIC5.99□□□□□ -1.45
LIG1P18858 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG1P18858 AP006245.2-201ENST00000522004 300 ntBASIC5.99□□□□□ -1.45
LIG1P18858 PHBP17-201ENST00000528576 541 ntBASIC5.99□□□□□ -1.45
LIG1P18858 AC068446.3-201ENST00000555285 382 ntBASIC5.99□□□□□ -1.45
LIG1P18858 AC090515.3-201ENST00000560431 315 ntBASIC5.99□□□□□ -1.45
LIG1P18858 AC055876.1-202ENST00000567053 138 ntBASIC5.99□□□□□ -1.45
LIG1P18858 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
LIG1P18858 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.99□□□□□ -1.45
LIG1P18858 MIR98-201ENST00000606724 119 ntBASIC5.99□□□□□ -1.45
LIG1P18858 AC131238.1-201ENST00000617135 328 ntBASIC5.99□□□□□ -1.45
LIG1P18858 AC138649.5-201ENST00000637456 137 ntBASIC5.99□□□□□ -1.45
LIG1P18858 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
LIG1P18858 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.99□□□□□ -1.45
LIG1P18858 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.99□□□□□ -1.45
LIG1P18858 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
LIG1P18858 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
LIG1P18858 ZNF33BP1-201ENST00000452497 1834 ntBASIC5.99□□□□□ -1.45
LIG1P18858 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.99□□□□□ -1.45
LIG1P18858 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.99□□□□□ -1.45
LIG1P18858 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
LIG1P18858 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
LIG1P18858 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LIG1P18858 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
LIG1P18858 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
LIG1P18858 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
LIG1P18858 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
LIG1P18858 AC005294.1-201ENST00000355509 281 ntBASIC5.98□□□□□ -1.45
LIG1P18858 RN7SKP153-201ENST00000365026 316 ntBASIC5.98□□□□□ -1.45
LIG1P18858 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
LIG1P18858 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
LIG1P18858 RNU6-171P-201ENST00000384354 107 ntBASIC5.98□□□□□ -1.45
LIG1P18858 U3.32-201ENST00000408116 212 ntBASIC5.98□□□□□ -1.45
LIG1P18858 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.98□□□□□ -1.45
LIG1P18858 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG1P18858 MTND2P23-201ENST00000422990 651 ntBASIC5.98□□□□□ -1.45
LIG1P18858 MTCO2P12-201ENST00000427426 682 ntBASIC5.98□□□□□ -1.45
LIG1P18858 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.98□□□□□ -1.45
LIG1P18858 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG1P18858 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG1P18858 ARPC3P5-201ENST00000448802 534 ntBASIC5.98□□□□□ -1.45
LIG1P18858 HIGD1AP8-201ENST00000453927 274 ntBASIC5.98□□□□□ -1.45
LIG1P18858 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG1P18858 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG1P18858 NIP7P2-201ENST00000485801 544 ntBASIC5.98□□□□□ -1.45
LIG1P18858 RN7SL214P-201ENST00000487317 265 ntBASIC5.98□□□□□ -1.45
LIG1P18858 AC096576.1-201ENST00000489014 359 ntBASIC5.98□□□□□ -1.45
LIG1P18858 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG1P18858 AC022133.1-201ENST00000490961 571 ntBASIC5.98□□□□□ -1.45
LIG1P18858 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG1P18858 IGLV2-28-201ENST00000520681 304 ntBASIC5.98□□□□□ -1.45
LIG1P18858 AP003181.2-201ENST00000528941 181 ntBASIC5.98□□□□□ -1.45
LIG1P18858 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.98□□□□□ -1.45
LIG1P18858 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.98□□□□□ -1.45
LIG1P18858 AC011611.1-201ENST00000552179 197 ntBASIC5.98□□□□□ -1.45
LIG1P18858 AL121821.2-201ENST00000556081 394 ntBASIC5.98□□□□□ -1.45
LIG1P18858 SUB1P2-201ENST00000556401 297 ntBASIC5.98□□□□□ -1.45
LIG1P18858 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.98□□□□□ -1.45
LIG1P18858 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LIG1P18858 MIR5186-201ENST00000577504 120 ntBASIC5.98□□□□□ -1.45
LIG1P18858 LLPHP1-201ENST00000603571 367 ntBASIC5.98□□□□□ -1.45
LIG1P18858 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
LIG1P18858 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
LIG1P18858 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
LIG1P18858 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.98□□□□□ -1.45
LIG1P18858 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
LIG1P18858 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
LIG1P18858 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.98□□□□□ -1.45
LIG1P18858 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
LIG1P18858 AL445437.1-201ENST00000623157 3087 ntBASIC5.97□□□□□ -1.45
LIG1P18858 NMD3P1-201ENST00000439704 1488 ntBASIC5.97□□□□□ -1.45
LIG1P18858 CASC19-204ENST00000641001 2055 ntBASIC5.97□□□□□ -1.45
LIG1P18858 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms