Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 MIR6715B-201ENST00000637172 77 ntBASIC4.17□□□□□ -1.74
SIX4Q9UIU6 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SIX4Q9UIU6 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SIX4Q9UIU6 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SIX4Q9UIU6 Z99496.1-201ENST00000469424 1477 ntBASIC4.17□□□□□ -1.74
SIX4Q9UIU6 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SIX4Q9UIU6 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 SNORD74.4-201ENST00000364129 80 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 MIR30B-201ENST00000384850 88 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 TAF9BP1-201ENST00000396646 746 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AL590084.2-201ENST00000401481 382 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 LAP3P1-201ENST00000403648 294 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC098592.1-201ENST00000419352 333 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 BX119904.4-201ENST00000424402 301 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC234781.2-201ENST00000426370 994 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 Z93242.1-201ENST00000427102 353 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AL390023.1-201ENST00000428836 262 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 KCTD10P1-201ENST00000434203 625 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 RSL24D1P3-201ENST00000449255 495 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 RPL21P11-201ENST00000461458 483 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 RPL7P18-201ENST00000478965 734 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 RPS3AP43-201ENST00000479743 781 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC048346.1-201ENST00000510247 144 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC079395.1-201ENST00000510981 262 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC087499.8-201ENST00000578406 226 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC115085.1-201ENST00000588924 229 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC146944.4-201ENST00000602697 718 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 PSMA6P4-201ENST00000603247 718 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC015813.4-201ENST00000610469 179 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC099669.2-201ENST00000616549 437 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AL591424.2-201ENST00000617023 128 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC079248.2-201ENST00000623779 326 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 UBE3AP2-201ENST00000429033 2259 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 ZNF542P-204ENST00000482727 1305 ntBASIC4.16□□□□□ -1.74
SIX4Q9UIU6 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX4Q9UIU6 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SIX4Q9UIU6 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
SIX4Q9UIU6 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SIX4Q9UIU6 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SIX4Q9UIU6 AL133412.1-201ENST00000380194 2992 ntBASIC4.15□□□□□ -1.74
SIX4Q9UIU6 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
SIX4Q9UIU6 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 RNA5SP97-201ENST00000365006 84 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 AC025750.1-201ENST00000399891 379 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 MTND4P20-201ENST00000424125 869 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 RWDD4P2-201ENST00000426392 563 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 RPL7P2-201ENST00000427639 268 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 OR4F13P-201ENST00000428478 931 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 AL354941.1-201ENST00000438600 464 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 AL117351.1-201ENST00000438864 766 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 AC122718.1-201ENST00000439448 744 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 MTCYBP34-201ENST00000439552 670 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 RPL7P59-201ENST00000447700 943 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 RPL5P24-201ENST00000463742 885 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 FAM133DP-201ENST00000464802 691 ntBASIC4.15□□□□□ -1.75
SIX4Q9UIU6 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC4.15□□□□□ -1.75
SIX4Q9UIU6 MTND3P7-201ENST00000474435 343 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms